Os01g0283500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os01g0283500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.82 | 0.354 | 9.14 | 0.837 | 1.59 | -0.628 | 1.07 | 1.48 | 0.133 | 8.56 | 20.1 | 3289 | -- | -- |
| 61.2 | 0.364 | 9.18 | 0.67 | 1.64 | -0.796 | 1.24 | -- | 0.0974 | 8.34 | 20.7 | 4133 | -- | -- |
| 60.23 | 0.361 | 9.14 | 0.873 | 1.6 | -0.625 | -- | 1.52 | 0.134 | 8.46 | 20.2 | 3162 | -- | -- |
| 63.36 | 0.371 | 9.18 | 0.7 | 1.6 | -0.929 | -- | -- | 0.133 | 8.35 | 20.2 | 3948 | -- | -- |
| 199.51 | 0.658 | 9.17 | 0.946 | -- | -0.561 | -- | 1.47 | 0.227 | -- | 22.9 | 3530 | -- | -- |
| 74.88 | 0.406 | 9.25 | 0.0846 | 1.59 | -- | 1.11 | -- | -0.158 | 8.58 | -- | -- | -- | -- |
| 78.82 | 0.416 | 9.25 | 0.119 | 1.59 | -- | -- | -- | -0.159 | 8.49 | -- | -- | -- | -- |
| 200.23 | 0.659 | 9.22 | 0.685 | -- | -0.954 | -- | -- | 0.134 | -- | 20.64 | 3654 | -- | -- |
| 70.29 | 0.39 | 9.22 | -- | 1.6 | -0.564 | -- | -- | -0.0597 | 8.42 | 20.25 | 2886 | -- | -- |
| 220.41 | 0.694 | 9.29 | 0.126 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 79.19 | 0.416 | 9.25 | -- | 1.59 | -- | -- | -- | -0.173 | 8.49 | -- | -- | -- | -- |
| 149.94 | 0.57 | 9.26 | -- | -- | -1.25 | -- | -- | 0.136 | -- | 25.9 | 637 | -- | -- |
| 220.83 | 0.694 | 9.29 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 3 | 55.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 4 | 55.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 56.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 8 | 56.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 11 | 56.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 17 | 56.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 37 | 56.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 51 | 56.82 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 53 | 56.85 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 54 | 56.85 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 58 | 56.86 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 87 | 56.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 108 | 57.00 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 149 | 57.10 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 19 |
| 183 | 57.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 184 | 57.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 209 | 57.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 210 | 57.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 217 | 57.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 226 | 57.29 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 235 | 57.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 236 | 57.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 250 | 57.35 | humidity | 90 | 14400 | < th | dose independent | sin | 15 | NA |
| 272 | 57.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 285 | 57.42 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 288 | 57.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 306 | 57.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 330 | 57.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 331 | 57.47 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 360 | 57.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 394 | 57.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 396 | 57.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 411 | 57.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 442 | 57.63 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 21 |
| 475 | 57.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 480 | 57.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 549 | 57.74 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 579 | 57.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 599 | 57.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 601 | 57.79 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 619 | 57.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 646 | 57.82 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 18 |
| 682 | 57.86 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 683 | 57.86 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 704 | 57.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 713 | 57.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 752 | 57.91 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 755 | 57.91 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 837 | 57.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 838 | 57.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 850 | 57.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 890 | 58.01 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 892 | 58.01 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 928 | 58.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 930 | 58.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 931 | 58.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 17 |
| 949 | 58.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 951 | 58.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 955 | 58.06 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |