BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0281100 Os01g0281100|AK109672
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0281100  Conserved hypothetical protein                      516   e-147

>Os01g0281100 Conserved hypothetical protein
          Length = 307

 Score =  516 bits (1329), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/307 (83%), Positives = 256/307 (83%)

Query: 1   MQMSSMACHSLPESGSNLSAADELFQNQRSEQGIYWTLWDSRLSDDLNTTTVYSDNHGSN 60
           MQMSSMACHSLPESGSNLSAADELFQNQRSEQGIYWTLWDSRLSDDLNTTTVYSDNHGSN
Sbjct: 1   MQMSSMACHSLPESGSNLSAADELFQNQRSEQGIYWTLWDSRLSDDLNTTTVYSDNHGSN 60

Query: 61  GGGTQSFDTSEHCSTVPSDSDEQPGYPSQFEPLHMEQTNDMFLSQFSDEEVRRMDAPFQA 120
           GGGTQSFDTSEHCSTVPSDSDEQPGYPSQFEPLHMEQTNDMFLSQFSDEEVRRMDAPFQA
Sbjct: 61  GGGTQSFDTSEHCSTVPSDSDEQPGYPSQFEPLHMEQTNDMFLSQFSDEEVRRMDAPFQA 120

Query: 121 LDMFPDSMHRLMSYEHILNGALVSDSKNQEVNMDQDDMDTCGFPLYFSHGLQDDGGLPSF 180
           LDMFPDSMHRLMSYEHILNGALVSDSKNQEVNMDQDDMDTCGFPLYFSHGLQDDGGLPSF
Sbjct: 121 LDMFPDSMHRLMSYEHILNGALVSDSKNQEVNMDQDDMDTCGFPLYFSHGLQDDGGLPSF 180

Query: 181 AKGMVAADTSSMDKAGASATERGDPGSSPPGFXXXXXXXXXXXMVQMARTTRICLRDAFY 240
           AKGMVAADTSSMDKAGASATERGDPGSSPPGF           MVQMARTTRICLRDAFY
Sbjct: 181 AKGMVAADTSSMDKAGASATERGDPGSSPPGFEEAVLEELEEVMVQMARTTRICLRDAFY 240

Query: 241 RLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSLTFRPPPCSPEAEAA 300
           RL                                        VVSLTFRPPPCSPEAEAA
Sbjct: 241 RLAEGSRSPRSAAAAADGATVAEATSASTTRPRRRRDAIDRTVVSLTFRPPPCSPEAEAA 300

Query: 301 MMRPTRA 307
           MMRPTRA
Sbjct: 301 MMRPTRA 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,077,292
Number of extensions: 412240
Number of successful extensions: 1176
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)