BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0279200 Os01g0279200|AK103258
         (439 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0279200  Similar to COP9 signalosome complex subunit 2 ...   911   0.0  
Os04g0444600  Similar to 26S proteasome subunit RPN6a (Fragm...   101   9e-22
Os03g0576400  Similar to 26S proteasome subunit RPN6a (Fragm...    99   5e-21

>Os01g0279200 Similar to COP9 signalosome complex subunit 2 (Signalosome subunit
           2) (FUSCA protein 12) (FUSCA12)
          Length = 439

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/439 (100%), Positives = 439/439 (100%)

Query: 1   MGSDADMEDYGFEYSDDEPEEQDVDIENQYYNSKGMVETDPEGALAGFDQVVRMEPEKAE 60
           MGSDADMEDYGFEYSDDEPEEQDVDIENQYYNSKGMVETDPEGALAGFDQVVRMEPEKAE
Sbjct: 1   MGSDADMEDYGFEYSDDEPEEQDVDIENQYYNSKGMVETDPEGALAGFDQVVRMEPEKAE 60

Query: 61  WGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 120
           WGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN
Sbjct: 61  WGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 120

Query: 121 FSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 180
           FSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG
Sbjct: 121 FSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 180

Query: 181 SDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSIKSAIPHPRIMGIIRECGGKM 240
           SDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSIKSAIPHPRIMGIIRECGGKM
Sbjct: 181 SDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSIKSAIPHPRIMGIIRECGGKM 240

Query: 241 HMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN 300
           HMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN
Sbjct: 241 HMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN 300

Query: 301 DPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIK 360
           DPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIK
Sbjct: 301 DPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIK 360

Query: 361 PYTRIRIPFISQELNFPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGDRSKGMRKYQAI 420
           PYTRIRIPFISQELNFPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGDRSKGMRKYQAI
Sbjct: 361 PYTRIRIPFISQELNFPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGDRSKGMRKYQAI 420

Query: 421 DKWNTQLKNIYQTVSNRVG 439
           DKWNTQLKNIYQTVSNRVG
Sbjct: 421 DKWNTQLKNIYQTVSNRVG 439



>Os04g0444600 Similar to 26S proteasome subunit RPN6a (Fragment)
          Length = 425

 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 19/323 (5%)

Query: 87  REMLTYIK---SAVTRNYSEKCINNIMDFVS---GSASQNFSLLQEFYQTTLKALEEAKN 140
           R +LT ++   S + +  + K +  I+D V+   G++    SL +E  + T       K 
Sbjct: 70  RNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQISLCKEMVEWT----RAEKR 125

Query: 141 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGSDDQKKGTQLLEVYAIEIQM 200
             L  +   +L  +  +  EY     +L  L K  +R D          L+++  +E ++
Sbjct: 126 TFLRQRVEARLAALLLENQEYTEALTLLTGLIKEVRRLDDK------LLLVDIDLLESKL 179

Query: 201 YTETKNNKKLKELYTKALSIKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 259
           +   +N  K K   T A +  +AI   P   G I    G +H  E+ +  A + FFEAF+
Sbjct: 180 HFSLRNLPKAKASLTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 239

Query: 260 NYDEAGNPRRIQCLKYLVLANMLM--ESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKN 317
            +    +P+ I  LKY++L  +++    +V      +A      P++ AM  +  AY K 
Sbjct: 240 AFSALEDPKAIFSLKYMLLCKIMVNQADDVAGIISSKAGLKYLGPDVDAMKAVADAYSKR 299

Query: 318 DIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELNFP 377
            +  FE  L+  +  + +DP +  ++  L   +  Q L +LI+PY+R+ I  I++ +  P
Sbjct: 300 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAEMIELP 359

Query: 378 EKDVEQLLVSLILDNRIQGHIDQ 400
              VE+ L  +ILD +  G +DQ
Sbjct: 360 VDHVEKKLSQMILDKKFAGTLDQ 382



>Os03g0576400 Similar to 26S proteasome subunit RPN6a (Fragment)
          Length = 358

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 16/303 (5%)

Query: 104 KCINNIMDFVS---GSASQNFSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE 160
           K +  I+D V+   G++    SL +E  + T       K   L  +   +L  +  +  E
Sbjct: 23  KIVRGIIDAVAKIIGTSELQISLCKEMVEWT----RAEKRTFLRQRVEARLAALLLENQE 78

Query: 161 YGRMSKILKELHKSCQREDGSDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSI 220
           Y     +L +L K  +R D          L+++  +E +++   +N  K K   T A + 
Sbjct: 79  YTDALTLLTDLIKEVRRLDDK------LLLVDIDLLESKLHFSLRNLPKAKASLTAARTA 132

Query: 221 KSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLA 279
            +AI   P   G I    G +H  E+ +  A + FFEAF+ +    +P+ I  LKY++L 
Sbjct: 133 ANAIYVPPAQQGTIDIQSGILHAEEKDYKTAYSYFFEAFEAFSALEDPKAIFSLKYMLLC 192

Query: 280 NMLM--ESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDP 337
            +++    +V      +A      P++ AM  +  AY K  +  FE  L+  +  + +DP
Sbjct: 193 KIMVNQADDVAGIISSKAGLKYLGPDVDAMKAVADAYSKRSLKYFETALRDYKSQLEEDP 252

Query: 338 FIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELNFPEKDVEQLLVSLILDNRIQGH 397
            +  ++  L   +  Q L +LI+PY R+ I  I++ +  P   VE+ L  +ILD +  G 
Sbjct: 253 IVHRHLSSLYDALLEQNLCRLIEPYARVEIAHIAEMIELPVDHVEKKLSQMILDKKFAGT 312

Query: 398 IDQ 400
           +DQ
Sbjct: 313 LDQ 315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,624,712
Number of extensions: 539895
Number of successful extensions: 1644
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 335
Effective length of database: 11,605,545
Effective search space: 3887857575
Effective search space used: 3887857575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)