BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0275900 Os01g0275900|Os01g0275900
         (956 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0275900  WD40-like domain containing protein                1969   0.0  

>Os01g0275900 WD40-like domain containing protein
          Length = 956

 Score = 1969 bits (5100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 945/956 (98%), Positives = 945/956 (98%)

Query: 1   MATSDDKAGVKEIPRSDISKRELLFHVFQEPAVIGSACVLLESAASVHSWCPLHPSLRQE 60
           MATSDDKAGVKEIPRSDISKRELLFHVFQEPAVIGSACVLLESAASVHSWCPLHPSLRQE
Sbjct: 1   MATSDDKAGVKEIPRSDISKRELLFHVFQEPAVIGSACVLLESAASVHSWCPLHPSLRQE 60

Query: 61  AKFKQKTNKFWEYQEQSNTWVEISMPFNLMSCINDTCTKVGSIEQPERRHGRASISSQEE 120
           AKFKQKTNKFWEYQEQSNTWVEISMPFNLMSCINDTCTKVGSIEQPERRHGRASISSQEE
Sbjct: 61  AKFKQKTNKFWEYQEQSNTWVEISMPFNLMSCINDTCTKVGSIEQPERRHGRASISSQEE 120

Query: 121 KDAEIDDNDQADRNDPVLPIRKRISLTRMSESSVWVTGQSGSIYERFWNGLAWVIAPHEL 180
           KDAEIDDNDQADRNDPVLPIRKRISLTRMSESSVWVTGQSGSIYERFWNGLAWVIAPHEL
Sbjct: 121 KDAEIDDNDQADRNDPVLPIRKRISLTRMSESSVWVTGQSGSIYERFWNGLAWVIAPHEL 180

Query: 181 PISVGYATATFIVNTTILALSEAGILYQLQLNEHAQPIWTEVIFNFEQQFIVLGEKTQSQ 240
           PISVGYATATFIVNTTILALSEAGILYQLQLNEHAQPIWTEVIFNFEQQFIVLGEKTQSQ
Sbjct: 181 PISVGYATATFIVNTTILALSEAGILYQLQLNEHAQPIWTEVIFNFEQQFIVLGEKTQSQ 240

Query: 241 AMHIRNGIVSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGT 300
           AMHIRNGIVSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGT
Sbjct: 241 AMHIRNGIVSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGT 300

Query: 301 VFTVSSTGDLYEFDRESRPSWKKHIWSEETAENVSLSSSVGCALHGLLGSNSVSLFLITK 360
           VFTVSSTGDLYEFDRESRPSWKKHIWSEETAENVSLSSSVGCALHGLLGSNSVSLFLITK
Sbjct: 301 VFTVSSTGDLYEFDRESRPSWKKHIWSEETAENVSLSSSVGCALHGLLGSNSVSLFLITK 360

Query: 361 DGLLVERRLHRRKWKWYKHGAPKSQRLSSITEVQQDESNDATSMYFTTTTGKVFEYQFPK 420
           DGLLVERRLHRRKWKWYKHGAPKSQRLSSITEVQQDESNDATSMYFTTTTGKVFEYQFPK
Sbjct: 361 DGLLVERRLHRRKWKWYKHGAPKSQRLSSITEVQQDESNDATSMYFTTTTGKVFEYQFPK 420

Query: 421 YTGGAQSNKIRGLWVNHMSPENTKVARNXXXXXXXXXXXIFPLDDGRLGELHLPGMGGDD 480
           YTGGAQSNKIRGLWVNHMSPENTKVARN           IFPLDDGRLGELHLPGMGGDD
Sbjct: 421 YTGGAQSNKIRGLWVNHMSPENTKVARNVRGVQVQVGRVIFPLDDGRLGELHLPGMGGDD 480

Query: 481 FGPSQHYSMRRKVPNKYEWSILDAPETEGWNAEYCTEEHGPTNCITGAKNVAADTKSNDL 540
           FGPSQHYSMRRKVPNKYEWSILDAPETEGWNAEYCTEEHGPTNCITGAKNVAADTKSNDL
Sbjct: 481 FGPSQHYSMRRKVPNKYEWSILDAPETEGWNAEYCTEEHGPTNCITGAKNVAADTKSNDL 540

Query: 541 GNIPPSRWRKEDKQQYLYVNTHERDEIESYNFLSRSIDINFHMRVMHADRSLFLITDNGL 600
           GNIPPSRWRKEDKQQYLYVNTHERDEIESYNFLSRSIDINFHMRVMHADRSLFLITDNGL
Sbjct: 541 GNIPPSRWRKEDKQQYLYVNTHERDEIESYNFLSRSIDINFHMRVMHADRSLFLITDNGL 600

Query: 601 TFEYLNNNGVWLWLRHEHTTSMKGTVGSYNGSLYLVDVHGNLHIRERNGDDLLWINCTAM 660
           TFEYLNNNGVWLWLRHEHTTSMKGTVGSYNGSLYLVDVHGNLHIRERNGDDLLWINCTAM
Sbjct: 601 TFEYLNNNGVWLWLRHEHTTSMKGTVGSYNGSLYLVDVHGNLHIRERNGDDLLWINCTAM 660

Query: 661 RKGRQVASGSPWDGIPGLPRRVTTDDALFFVNKRGRLLQFTVALRKFKWKDCQSPPDTKI 720
           RKGRQVASGSPWDGIPGLPRRVTTDDALFFVNKRGRLLQFTVALRKFKWKDCQSPPDTKI
Sbjct: 661 RKGRQVASGSPWDGIPGLPRRVTTDDALFFVNKRGRLLQFTVALRKFKWKDCQSPPDTKI 720

Query: 721 AFIVDQEVFRRNVIFAVGRNGRLYQYNRITELWHKHYQSPHLVLSRSPGTAMRPSHLSLA 780
           AFIVDQEVFRRNVIFAVGRNGRLYQYNRITELWHKHYQSPHLVLSRSPGTAMRPSHLSLA
Sbjct: 721 AFIVDQEVFRRNVIFAVGRNGRLYQYNRITELWHKHYQSPHLVLSRSPGTAMRPSHLSLA 780

Query: 781 GSIFMVSEHGGLVEYHFSPQDGWEWVEHGTPHRDVAIVGAPGPCFDGSQLFIIGSDGDVY 840
           GSIFMVSEHGGLVEYHFSPQDGWEWVEHGTPHRDVAIVGAPGPCFDGSQLFIIGSDGDVY
Sbjct: 781 GSIFMVSEHGGLVEYHFSPQDGWEWVEHGTPHRDVAIVGAPGPCFDGSQLFIIGSDGDVY 840

Query: 841 RRHLENWTWRWTSHGHPSAPSAVAMNAAGGDKSCATLGSAADAHYADGFVGSCDEKVAAA 900
           RRHLENWTWRWTSHGHPSAPSAVAMNAAGGDKSCATLGSAADAHYADGFVGSCDEKVAAA
Sbjct: 841 RRHLENWTWRWTSHGHPSAPSAVAMNAAGGDKSCATLGSAADAHYADGFVGSCDEKVAAA 900

Query: 901 RPVPFSEDAVVFELRDGRLAELRRGADGCGGGWEWARIISTPASACMTSYWTAVAT 956
           RPVPFSEDAVVFELRDGRLAELRRGADGCGGGWEWARIISTPASACMTSYWTAVAT
Sbjct: 901 RPVPFSEDAVVFELRDGRLAELRRGADGCGGGWEWARIISTPASACMTSYWTAVAT 956



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,232,472
Number of extensions: 1700547
Number of successful extensions: 4511
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4490
Number of HSP's successfully gapped: 1
Length of query: 956
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 846
Effective length of database: 11,292,261
Effective search space: 9553252806
Effective search space used: 9553252806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)