Os01g0275900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0275900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.2 | 0.511 | 8.3 | 0.785 | 0.314 | -1.56 | -0.0378 | -0.0802 | 0.495 | 11.5 | 18.8 | 377 | -- | -- |
| 118.2 | 0.506 | 8.3 | 0.804 | 0.315 | -1.57 | -0.0417 | -- | 0.5 | 11.5 | 18.7 | 376 | -- | -- |
| 118.2 | 0.506 | 8.31 | 0.779 | 0.316 | -1.56 | -- | -0.11 | 0.492 | 11.4 | 18.7 | 376 | -- | -- |
| 118.21 | 0.506 | 8.3 | 0.802 | 0.316 | -1.56 | -- | -- | 0.498 | 11.5 | 18.7 | 375 | -- | -- |
| 120.64 | 0.512 | 8.31 | 0.831 | -- | -1.61 | -- | -0.0648 | 0.515 | -- | 18.6 | 541 | -- | -- |
| 156.09 | 0.586 | 8.35 | 0.402 | 0.652 | -- | 0.834 | -- | 0.226 | 7.31 | -- | -- | -- | -- |
| 157.9 | 0.588 | 8.35 | 0.421 | 0.652 | -- | -- | -- | 0.225 | 7.51 | -- | -- | -- | -- |
| 120.65 | 0.512 | 8.31 | 0.836 | -- | -1.62 | -- | -- | 0.512 | -- | 18.7 | 542 | -- | -- |
| 132.07 | 0.535 | 8.34 | -- | 0.36 | -1.29 | -- | -- | 0.316 | 11.7 | 23.64 | 315 | -- | -- |
| 180.64 | 0.628 | 8.37 | 0.431 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 162.58 | 0.596 | 8.36 | -- | 0.656 | -- | -- | -- | 0.178 | 7.46 | -- | -- | -- | -- |
| 136.76 | 0.545 | 8.34 | -- | -- | -1.3 | -- | -- | 0.345 | -- | 22.76 | 482 | -- | -- |
| 185.55 | 0.636 | 8.38 | -- | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 55 | 117.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 57 | 117.12 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 58 | 117.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 72 | 117.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 74 | 117.55 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 164 | 118.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 268 | 119.68 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 299 | 119.86 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 324 | 120.12 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 329 | 120.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 340 | 120.25 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 385 | 120.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 392 | 120.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 396 | 120.56 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 441 | 120.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 455 | 120.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 468 | 120.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 472 | 120.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 473 | 120.91 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 482 | 120.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 491 | 120.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 493 | 120.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 512 | 121.03 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 541 | 121.13 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 548 | 121.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 567 | 121.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 610 | 121.33 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 629 | 121.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 670 | 121.59 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 713 | 121.71 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 756 | 121.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 767 | 121.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 799 | 121.95 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 803 | 121.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 806 | 121.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 812 | 121.97 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 813 | 121.97 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 851 | 122.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 874 | 122.15 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 885 | 122.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 888 | 122.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 933 | 122.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 20 |
| 952 | 122.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 993 | 122.44 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |