BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0253500 Os01g0253500|J100088F12
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0253500  Conserved hypothetical protein                      262   3e-70

>Os01g0253500 Conserved hypothetical protein
          Length = 318

 Score =  262 bits (669), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 157/297 (52%), Positives = 157/297 (52%)

Query: 22  RRRCAXXXXXXXXXXXXXXSEQFFFFSAPASPVHYILRSPPSSXXXXXXXXXHYAPXXXX 81
           RRRCA              SEQFFFFSAPASPVHYILRSPPSS         HYAP    
Sbjct: 22  RRRCAGKDDVDDADDDGGGSEQFFFFSAPASPVHYILRSPPSSTTTTTAAAAHYAPGVDG 81

Query: 82  XXXXXXXXXXXFEFAARQHXXXXXXXXMSSAEELFVAGRIRVGCLSPIRXXXXXXXXXXX 141
                      FEFAARQH        MSSAEELFVAGRIRVGCLSPIR           
Sbjct: 82  DHGCGGGGGGDFEFAARQHGAGNGAAAMSSAEELFVAGRIRVGCLSPIRQEEAGFGEQEE 141

Query: 142 XCVDEGESGGQXXXXXXXXXXXXXXXXHLAKIAEPSDSFAXXXXXXXXXXXXXXXXXXAK 201
            CVDEGESGGQ                HLAKIAEPSDSFA                  AK
Sbjct: 142 GCVDEGESGGQRPPPRRARSASPPRSPHLAKIAEPSDSFASSSSSSTSTSSSSSSSSSAK 201

Query: 202 STRRRISLRDLLLGXXXXXXXXXXXXXXXXXXGFWPPSIWPSSRSKKTATLALXXXXXXX 261
           STRRRISLRDLLLG                  GFWPPSIWPSSRSKKTATLAL       
Sbjct: 202 STRRRISLRDLLLGSTANSDSATAAAAAERSSGFWPPSIWPSSRSKKTATLALPCPCPCP 261

Query: 262 XSLQXXXXXXXXXXXXXXXXXXXXXXLPYRQGLVLGCLGFGARSYGLAKSMHPLSSG 318
            SLQ                      LPYRQGLVLGCLGFGARSYGLAKSMHPLSSG
Sbjct: 262 PSLQPARRSTSSERSSAPPPRRRATSLPYRQGLVLGCLGFGARSYGLAKSMHPLSSG 318



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,117,236
Number of extensions: 101674
Number of successful extensions: 127
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)