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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0253500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0605) R2 : 0.559
β1 : -4.26 (0.262) R2dD : 0.562 R2D : -0.0175
β2 : 1.11 (0.12) R2dC : 0.0835 R2C : 0.0732
β3 : 1.72 (0.187) R2dE : 0.169 R2E : 0.0733
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.97 (0.641) R2dD*E : 0.114 R2D*E : -0.00501
γ1 : 0.207 (0.126) R2dN8 : 0.00503 R2N8 : 0.0331
σ : 0.919
deviance : 389.44
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_____
C
peak time of C : 21.7
E
wheather : temperature
threshold : 20
memory length : 4290
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.6
open length of G : 1.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
389.4 0.927 4.85 -4.25 1.11 1.72 0.112 -3.96 0.207 21.7 20 4290 21.6 1.88
425.12 0.96 4.81 -3.74 1.06 2.74 0.0113 -- 0.33 21.7 20.13 4335 19.9 2.9
389.44 0.919 4.85 -4.26 1.11 1.72 -- -3.97 0.207 21.7 20 4290 21.6 1.88
407.98 0.941 4.67 -4.11 0.999 3.24 -- -- 0.35 21.6 19.5 4335 19.9 2.89
455.81 0.994 4.83 -4.26 -- 1.78 -- -4.85 0.234 -- 20.26 4340 21.4 0.5
573.97 1.12 4.48 -1.7 1.09 -- 0.207 -- 1.22 22.1 -- -- -- --
574.13 1.12 4.48 -1.71 1.09 -- -- -- 1.22 22.2 -- -- -- --
469.11 1.01 4.67 -4.11 -- 3.24 -- -- 0.35 -- 19.5 7614 19.9 2.89
639.52 1.18 4.44 -- 1.48 -0.547 -- -- 1.43 22.3 14.12 10794 20.9 4.29
645.77 1.19 4.45 -1.7 -- -- -- -- 1.23 -- -- -- -- --
651.3 1.19 4.43 -- 1.08 -- -- -- 1.41 22 -- -- -- --
673.56 1.21 4.38 -- -- 1.43 -- -- 1.38 -- 12.1 10726 14.1 10.3
721.65 1.25 4.4 -- -- -- -- -- 1.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.48 humidity 90 14400 > th dose dependent rect. 5 2
2 388.93 humidity 90 14400 > th dose dependent rect. 4 4
4 393.08 temperature 20 4320 > th dose independent rect. 21 2
5 393.29 temperature 20 4320 > th dose independent rect. 20 4
9 394.18 temperature 20 4320 < th dose independent rect. 20 4
21 396.27 humidity 90 14400 > th dose dependent rect. 22 19
23 396.33 humidity 90 14400 > th dose dependent rect. 3 8
28 396.71 humidity 90 14400 > th dose dependent sin 5 NA
31 396.80 humidity 90 14400 > th dose dependent rect. 2 13
91 399.00 humidity 90 14400 > th dose dependent rect. 12 19
210 402.52 radiation 1 43200 > th dose independent rect. 18 11
235 403.03 humidity 90 14400 > th dose dependent no NA NA
251 403.55 radiation 10 14400 < th dose dependent rect. 24 5
253 403.61 humidity 90 14400 > th dose independent rect. 24 11
271 404.17 humidity 90 14400 > th dose independent rect. 22 13
284 404.58 humidity 90 14400 > th dose independent sin 8 NA
292 404.70 humidity 90 14400 > th dose dependent rect. 2 23
296 404.78 humidity 90 14400 > th dose dependent sin 13 NA
319 405.41 temperature 20 4320 > th dose independent sin 14 NA
341 405.91 radiation 10 14400 < th dose dependent rect. 2 3
344 405.93 radiation 1 14400 > th dose independent rect. 18 13
352 406.14 humidity 90 14400 > th dose independent rect. 14 16
354 406.16 temperature 20 4320 < th dose independent sin 14 NA
361 406.25 humidity 90 14400 > th dose independent rect. 17 14
372 406.40 temperature 20 1440 > th dose independent rect. 22 12
374 406.43 temperature 20 1440 < th dose independent rect. 22 12
387 406.60 wind 3 43200 < th dose dependent rect. 8 2
404 406.85 humidity 80 43200 < th dose dependent rect. 21 2
419 407.24 humidity 90 14400 < th dose independent rect. 17 11
437 407.51 atmosphere 995 43200 < th dose dependent rect. 14 4
451 407.68 temperature 20 1440 > th dose independent rect. 5 2
452 407.68 humidity 90 14400 > th dose dependent rect. 22 3
458 407.77 humidity 90 14400 > th dose independent rect. 21 6
459 407.77 humidity 90 14400 < th dose independent rect. 21 6
483 408.13 temperature 25 4320 < th dose dependent rect. 21 2
486 408.20 radiation 1 14400 < th dose independent rect. 18 13
491 408.24 temperature 20 1440 > th dose independent sin 8 NA
496 408.31 temperature 15 4320 > th dose dependent rect. 21 3
508 408.45 temperature 20 1440 < th dose independent sin 8 NA
516 408.56 humidity 90 14400 < th dose independent rect. 17 14
532 408.80 humidity 90 14400 < th dose independent sin 11 NA
543 408.89 temperature 20 1440 < th dose independent rect. 5 2
636 409.69 temperature 25 1440 < th dose dependent rect. 21 12
651 409.81 humidity 90 14400 < th dose independent rect. 24 11
662 409.92 atmosphere 995 43200 > th dose independent rect. 13 2
665 409.94 temperature 25 1440 < th dose dependent rect. 3 6
679 410.11 humidity 90 14400 < th dose independent rect. 21 14
695 410.28 radiation 1 43200 < th dose independent rect. 18 11
708 410.38 atmosphere 995 43200 < th dose independent rect. 14 1
725 410.42 humidity 90 14400 < th dose independent rect. 21 11
756 410.63 atmosphere 995 43200 < th dose independent rect. 12 4
791 410.97 humidity 90 14400 < th dose independent rect. 21 4
807 411.04 temperature 25 1440 < th dose dependent rect. 6 3
844 411.27 temperature 20 4320 > th dose independent rect. 17 17
864 411.35 temperature 15 1440 > th dose dependent rect. 22 11
876 411.39 humidity 90 14400 > th dose dependent rect. 21 5
881 411.42 temperature 15 1440 > th dose dependent rect. 24 9
946 411.75 temperature 25 1440 < th dose dependent sin 9 NA
999 411.98 radiation 30 4320 < th dose independent rect. 16 16