BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0247700 Os01g0247700|J100058P10
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0247700  C4-dicarboxylate transporter/malic acid transp...   177   1e-45
Os05g0269200                                                       84   3e-17

>Os01g0247700 C4-dicarboxylate transporter/malic acid transport protein family
          protein
          Length = 90

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MMQVSRPTLFKRAMRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASVLMLALAILSVA 60
          MMQVSRPTLFKRAMRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASVLMLALAILSVA
Sbjct: 1  MMQVSRPTLFKRAMRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASVLMLALAILSVA 60

Query: 61 VTLALMVFTVLRTNDLLPHDDPFSCPPLAR 90
          VTLALMVFTVLRTNDLLPHDDPFSCPPLAR
Sbjct: 61 VTLALMVFTVLRTNDLLPHDDPFSCPPLAR 90



>Os05g0269200 
          Length = 399

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 4   VSRPTLFKRAMRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASVLMLALAILSVAVTL 63
           VSRPTLF+RAMRRFSVAWWA+ FPLT LA+A+ EYA+EV + AA VL+L L+ LSV VT+
Sbjct: 295 VSRPTLFRRAMRRFSVAWWAFPFPLTALAVASVEYAREVEDHAAVVLVLVLSALSVVVTV 354

Query: 64  ALMVFTVLRTNDLLPH--DDPFSC 85
           A++V T +RT+DLLPH  DDP  C
Sbjct: 355 AVVVCTAIRTSDLLPHGDDDPLPC 378



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,605,737
Number of extensions: 63144
Number of successful extensions: 307
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 2
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)