BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0246500 Os01g0246500|AK058984
         (315 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0246500  Similar to Minus dominance protein                  510   e-145

>Os01g0246500 Similar to Minus dominance protein
          Length = 315

 Score =  510 bits (1313), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/275 (92%), Positives = 255/275 (92%)

Query: 41  QPQKPTRVSLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLVSGKSG 100
           QPQKPTRVSLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLVSGKSG
Sbjct: 41  QPQKPTRVSLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLVSGKSG 100

Query: 101 DDTKNAEREKAKGLLEISKVAKQKALSASGLSTVSPGAFQGVAKSQQGSSKAGQVSPPGK 160
           DDTKNAEREKAKGLLEISKVAKQKALSASGLSTVSPGAFQGVAKSQQGSSKAGQVSPPGK
Sbjct: 101 DDTKNAEREKAKGLLEISKVAKQKALSASGLSTVSPGAFQGVAKSQQGSSKAGQVSPPGK 160

Query: 161 QNVLGGSAILSYGTQTKGIPTYMDDFKYGFPSSGLSLQTMKWWGTDSHTETTPAKDDNGE 220
           QNVLGGSAILSYGTQTKGIPTYMDDFKYGFPSSGLSLQTMKWWGTDSHTETTPAKDDNGE
Sbjct: 161 QNVLGGSAILSYGTQTKGIPTYMDDFKYGFPSSGLSLQTMKWWGTDSHTETTPAKDDNGE 220

Query: 221 APESANEASKGMTXXXXXXXXXXXXXXXXXXXXITTEPSAQLCSLRRKAVDDGRKLLTGK 280
           APESANEASKGMT                    ITTEPSAQLCSLRRKAVDDGRKLLTGK
Sbjct: 221 APESANEASKGMTDDELDWGADEAEAEADADSAITTEPSAQLCSLRRKAVDDGRKLLTGK 280

Query: 281 SCGGLELCRLNKRQKMALAQVFGASLPEQLRSKLG 315
           SCGGLELCRLNKRQKMALAQVFGASLPEQLRSKLG
Sbjct: 281 SCGGLELCRLNKRQKMALAQVFGASLPEQLRSKLG 315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,882,250
Number of extensions: 335621
Number of successful extensions: 724
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)