Os01g0246500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Minus dominance protein.
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Os01g0246500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Minus dominance protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.15 | 0.301 | 10.4 | -0.438 | 0.705 | 1.04 | -0.408 | 0.782 | 0.0201 | 10.4 | 21.9 | 224 | -- | -- |
| 41.63 | 0.301 | 10.4 | -0.391 | 0.682 | 0.853 | -0.437 | -- | 0.0269 | 10.4 | 22.03 | 274 | -- | -- |
| 41.81 | 0.301 | 10.4 | -0.462 | 0.714 | 1.04 | -- | 0.859 | 0.0176 | 10.4 | 21.98 | 211 | -- | -- |
| 42.43 | 0.303 | 10.4 | -0.402 | 0.69 | 0.83 | -- | -- | 0.0265 | 10.3 | 22.17 | 281 | -- | -- |
| 60.16 | 0.361 | 10.4 | -0.165 | -- | 0.988 | -- | -1.01 | 0.13 | -- | 34.2 | 775 | -- | -- |
| 48.44 | 0.326 | 10.4 | -0.569 | 0.677 | -- | -0.396 | -- | -0.065 | 10 | -- | -- | -- | -- |
| 49.04 | 0.328 | 10.4 | -0.585 | 0.68 | -- | -- | -- | -0.0663 | 9.92 | -- | -- | -- | -- |
| 60.63 | 0.363 | 10.4 | -0.331 | -- | 1.01 | -- | -- | 0.0895 | -- | 48.32 | 774 | -- | -- |
| 46.27 | 0.317 | 10.4 | -- | 0.689 | 1.09 | -- | -- | 0.0973 | 10.4 | 22 | 288 | -- | -- |
| 76.8 | 0.409 | 10.4 | -0.593 | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
| 58.07 | 0.356 | 10.4 | -- | 0.682 | -- | -- | -- | -0.00114 | 9.98 | -- | -- | -- | -- |
| 63.22 | 0.37 | 10.4 | -- | -- | 1.14 | -- | -- | 0.143 | -- | 41.49 | 783 | -- | -- |
| 86.08 | 0.433 | 10.4 | -- | -- | -- | -- | -- | -0.000591 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 3 | 38.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 9 | 38.23 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 10 | 38.27 | temperature | 25 | 90 | < th | dose dependent | sin | 4 | NA |
| 12 | 38.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 17 | 38.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 35 | 38.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 39 | 38.61 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 40 | 38.63 | humidity | 70 | 30 | > th | dose dependent | rect. | 5 | 16 |
| 44 | 38.66 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 84 | 39.01 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 14 |
| 112 | 39.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 18 |
| 137 | 39.26 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 18 |
| 141 | 39.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 9 |
| 145 | 39.29 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 189 | 39.42 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 18 |
| 210 | 39.46 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 11 |
| 234 | 39.52 | temperature | 20 | 90 | > th | dose independent | sin | 2 | NA |
| 255 | 39.57 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 307 | 39.68 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 17 |
| 319 | 39.70 | temperature | 20 | 90 | < th | dose independent | sin | 2 | NA |
| 337 | 39.74 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 11 |
| 378 | 39.82 | humidity | 70 | 10 | > th | dose independent | rect. | 5 | 18 |
| 457 | 39.98 | humidity | 70 | 30 | > th | dose dependent | sin | 23 | NA |
| 593 | 40.23 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 18 |
| 664 | 40.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 673 | 40.35 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 806 | 40.54 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 881 | 40.66 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 10 |
| 882 | 40.66 | humidity | 70 | 10 | > th | dose independent | rect. | 5 | 16 |
| 893 | 40.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 6 |