BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0232800 Os01g0232800|J090038D13
         (87 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0232800  Hypothetical protein                                137   2e-33
AK060522                                                          100   4e-22

>Os01g0232800 Hypothetical protein
          Length = 87

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 70/87 (80%)

Query: 1  SSVIYSCSEIKLEEAAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDRXXXXXX 60
          SSVIYSCSEIKLEEAAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR      
Sbjct: 1  SSVIYSCSEIKLEEAAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDRLVSLFV 60

Query: 61 XXXXXXXXXXXDFLLYDTNNSLLRMRS 87
                     DFLLYDTNNSLLRMRS
Sbjct: 61 FFPFVSFVTLVDFLLYDTNNSLLRMRS 87



>AK060522 
          Length = 459

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 6   SCSEIKLEEAAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 54
           S +EIKLEEAA+LHYTYTKFSDLTSRRDRCGCKPTK+DVKRCF+L+FDR
Sbjct: 272 SPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDR 320



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,151,572
Number of extensions: 54314
Number of successful extensions: 103
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)