BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0228800 Os01g0228800|AK065657
         (687 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0228800  Conserved hypothetical protein                     1381   0.0  

>Os01g0228800 Conserved hypothetical protein
          Length = 687

 Score = 1381 bits (3575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/687 (97%), Positives = 667/687 (97%)

Query: 1   MHQDSFRSVVCRXXXXXXXXXXXXXXYPEIAQCAVPCVVTLQPTVCRGCQGRDWSPSQSN 60
           MHQDSFRSVVCR              YPEIAQCAVPCVVTLQPTVCRGCQGRDWSPSQSN
Sbjct: 1   MHQDSFRSVVCRSLSKSLSSKTKESSYPEIAQCAVPCVVTLQPTVCRGCQGRDWSPSQSN 60

Query: 61  REDMSMMLQKDYLMASSLSRRFAEDLLRGAMDLQDSLTMLEKFQTASRSMRVSNKKRRPE 120
           REDMSMMLQKDYLMASSLSRRFAEDLLRGAMDLQDSLTMLEKFQTASRSMRVSNKKRRPE
Sbjct: 61  REDMSMMLQKDYLMASSLSRRFAEDLLRGAMDLQDSLTMLEKFQTASRSMRVSNKKRRPE 120

Query: 121 GCERSPDTSGFRGALSEASNAKKMVGRSASSGLDGELTNSTDELKRVIKDSFYRKNILSV 180
           GCERSPDTSGFRGALSEASNAKKMVGRSASSGLDGELTNSTDELKRVIKDSFYRKNILSV
Sbjct: 121 GCERSPDTSGFRGALSEASNAKKMVGRSASSGLDGELTNSTDELKRVIKDSFYRKNILSV 180

Query: 181 YPNDEQASMSQSLHYMPNKNSLSKPNEQKKAAPRSLPSCAPGQSEKSKSPSLVAKLMGLD 240
           YPNDEQASMSQSLHYMPNKNSLSKPNEQKKAAPRSLPSCAPGQSEKSKSPSLVAKLMGLD
Sbjct: 181 YPNDEQASMSQSLHYMPNKNSLSKPNEQKKAAPRSLPSCAPGQSEKSKSPSLVAKLMGLD 240

Query: 241 GLPTHNSNTFKKDESMKTVSSPRALFDIEMPKVQQNDAHMSSPYSRKSNVSLYDSTVVNE 300
           GLPTHNSNTFKKDESMKTVSSPRALFDIEMPKVQQNDAHMSSPYSRKSNVSLYDSTVVNE
Sbjct: 241 GLPTHNSNTFKKDESMKTVSSPRALFDIEMPKVQQNDAHMSSPYSRKSNVSLYDSTVVNE 300

Query: 301 IGSMKTIRREKGIEQPQTRAAKDIKVVSHTSRKQQIKETTEMGRRSSDKQRPHSTYRNRE 360
           IGSMKTIRREKGIEQPQTRAAKDIKVVSHTSRKQQIKETTEMGRRSSDKQRPHSTYRNRE
Sbjct: 301 IGSMKTIRREKGIEQPQTRAAKDIKVVSHTSRKQQIKETTEMGRRSSDKQRPHSTYRNRE 360

Query: 361 GRKDTKSKTGSASRSSANTVKRPDKKSMIAXXXXXXTCRTRKPVARKAPSNSREKAVSSR 420
           GRKDTKSKTGSASRSSANTVKRPDKKSMIA      TCRTRKPVARKAPSNSREKAVSSR
Sbjct: 361 GRKDTKSKTGSASRSSANTVKRPDKKSMIASSSSSSTCRTRKPVARKAPSNSREKAVSSR 420

Query: 421 SRKNSTIDDIVAYELHREFIQVDGPSTEHSATPSDESCQSVVDWDTEPSIDGIREDLSES 480
           SRKNSTIDDIVAYELHREFIQVDGPSTEHSATPSDESCQSVVDWDTEPSIDGIREDLSES
Sbjct: 421 SRKNSTIDDIVAYELHREFIQVDGPSTEHSATPSDESCQSVVDWDTEPSIDGIREDLSES 480

Query: 481 YEASVTTSSAERTDSANGDPFHPSTHLVSKNEVEIKDEMSLLLLSDQPFLTRAAELIGIG 540
           YEASVTTSSAERTDSANGDPFHPSTHLVSKNEVEIKDEMSLLLLSDQPFLTRAAELIGIG
Sbjct: 481 YEASVTTSSAERTDSANGDPFHPSTHLVSKNEVEIKDEMSLLLLSDQPFLTRAAELIGIG 540

Query: 541 EPGHLINRYKGIRKAQMGNHELFVDTATEQLERKHRQRNSLCYTGIWSQKCRTAPYFSLE 600
           EPGHLINRYKGIRKAQMGNHELFVDTATEQLERKHRQRNSLCYTGIWSQKCRTAPYFSLE
Sbjct: 541 EPGHLINRYKGIRKAQMGNHELFVDTATEQLERKHRQRNSLCYTGIWSQKCRTAPYFSLE 600

Query: 601 ALLTDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSVWDMGWEDWIFMEE 660
           ALLTDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSVWDMGWEDWIFMEE
Sbjct: 601 ALLTDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSVWDMGWEDWIFMEE 660

Query: 661 TQCFIRDVGESILSGLIEEAALDMWVH 687
           TQCFIRDVGESILSGLIEEAALDMWVH
Sbjct: 661 TQCFIRDVGESILSGLIEEAALDMWVH 687



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,259,782
Number of extensions: 835950
Number of successful extensions: 2256
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2256
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 579
Effective length of database: 11,396,689
Effective search space: 6598682931
Effective search space used: 6598682931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)