BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0225400 Os01g0225400|J080301M15
         (138 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0225400  Ketopantoate hydroxymethyltransferase family p...   231   1e-61
Os01g0225500                                                      176   3e-45

>Os01g0225400 Ketopantoate hydroxymethyltransferase family protein
          Length = 138

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 115/138 (83%)

Query: 1   CFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKF 60
           CFSVVLEC         TSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKF
Sbjct: 1   CFSVVLECVPAPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKF 60

Query: 61  CKQFGNVGHVINKALSEYKQEVETRSFPGPSHTPYKIAAADVDGFANALQKMGLDXXXXX 120
           CKQFGNVGHVINKALSEYKQEVETRSFPGPSHTPYKIAAADVDGFANALQKMGLD     
Sbjct: 61  CKQFGNVGHVINKALSEYKQEVETRSFPGPSHTPYKIAAADVDGFANALQKMGLDEAANA 120

Query: 121 XXXXXXXXXKDGELPENK 138
                    KDGELPENK
Sbjct: 121 AAAAAENAEKDGELPENK 138



>Os01g0225500 
          Length = 399

 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 1   CFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKF 60
           CF+VVLEC         TSAL IPTIGIGAGPFCSGQVLVYHDLLG  Q   HAKV+PKF
Sbjct: 258 CFAVVLECVPAPVAAAATSALTIPTIGIGAGPFCSGQVLVYHDLLGTFQT-SHAKVSPKF 316

Query: 61  CKQFGNVGHVINKALSEYKQEVETRSFPGPSHTPYKIAAADVDGFANALQKMGLD 115
           CKQ+GN+G VIN+ALS+YKQEVET+SFPGPSHTPYK+AA DVD F NAL+  GL+
Sbjct: 317 CKQYGNIGDVINRALSKYKQEVETQSFPGPSHTPYKLAATDVDAFLNALKMKGLN 371



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,002,940
Number of extensions: 137967
Number of successful extensions: 201
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)