Os01g0225400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ketopantoate hydroxymethyltransferase family protein.
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Os01g0225400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ketopantoate hydroxymethyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.94 | 0.611 | 9.18 | -1.45 | 1.05 | -2.42 | 0.297 | 4.15 | -1.04 | 1.38 | 25.69 | 1387 | -- | -- |
| 165.81 | 0.6 | 9.25 | -2.39 | 1 | -1.97 | 0.251 | -- | -0.901 | 1.44 | 24.95 | 7156 | -- | -- |
| 169.29 | 0.606 | 9.18 | -1.44 | 1.05 | -2.43 | -- | 4.25 | -1.04 | 1.38 | 25.7 | 1382 | -- | -- |
| 165.37 | 0.599 | 9.23 | -2.4 | 0.952 | -2.02 | -- | -- | -0.888 | 1.49 | 24.1 | 7215 | -- | -- |
| 221.34 | 0.693 | 9.16 | -1.37 | -- | -2.6 | -- | 4.82 | -0.996 | -- | 25.6 | 1620 | -- | -- |
| 349.2 | 0.876 | 9.36 | -3.29 | 0.827 | -- | 0.0362 | -- | -1.48 | 1.22 | -- | -- | -- | -- |
| 349.2 | 0.875 | 9.36 | -3.29 | 0.827 | -- | -- | -- | -1.48 | 1.23 | -- | -- | -- | -- |
| 216.84 | 0.686 | 9.19 | -2.43 | -- | -2.11 | -- | -- | -0.712 | -- | 24.8 | 8887 | -- | -- |
| 204.78 | 0.666 | 9.05 | -- | 0.959 | -3.25 | -- | -- | -0.119 | 1.29 | 18.1 | 24367 | -- | -- |
| 391.49 | 0.925 | 9.35 | -3.26 | -- | -- | -- | -- | -1.46 | -- | -- | -- | -- | -- |
| 634.03 | 1.18 | 9.28 | -- | 0.772 | -- | -- | -- | -1.11 | 1.06 | -- | -- | -- | -- |
| 257.95 | 0.748 | 9.05 | -- | -- | -3.15 | -- | -- | -0.136 | -- | 17.8 | 24779 | -- | -- |
| 671.03 | 1.21 | 9.27 | -- | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 7 | 169.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 16 | 169.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 36 | 170.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 37 | 170.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 84 | 170.84 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 85 | 170.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 91 | 170.94 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 170.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 116 | 171.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 144 | 171.92 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 158 | 172.12 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 184 | 172.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 202 | 173.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 226 | 174.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 230 | 174.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 233 | 174.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 241 | 174.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 277 | 175.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 310 | 176.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 333 | 176.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 356 | 177.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 372 | 177.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 376 | 177.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 377 | 177.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 379 | 177.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 395 | 178.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 400 | 178.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 414 | 178.66 | temperature | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 440 | 179.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 441 | 179.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 447 | 179.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 449 | 179.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 466 | 179.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 478 | 179.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 483 | 179.58 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 509 | 179.62 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 517 | 179.64 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 621 | 180.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 628 | 180.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 645 | 180.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 665 | 180.65 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |
| 673 | 180.78 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 705 | 181.23 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 801 | 181.38 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 879 | 181.89 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 883 | 181.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 887 | 182.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 890 | 182.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 892 | 182.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 906 | 182.40 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 909 | 182.52 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 916 | 182.65 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 933 | 182.72 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 973 | 183.18 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 974 | 183.19 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 985 | 183.34 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 990 | 183.45 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 999 | 183.61 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |