BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0221300 Os01g0221300|AK073330
         (494 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0221300  Conserved hypothetical protein                      753   0.0  
Os01g0656900  Conserved hypothetical protein                       97   4e-20
Os04g0372300                                                       92   1e-18

>Os01g0221300 Conserved hypothetical protein
          Length = 494

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/477 (80%), Positives = 386/477 (80%)

Query: 18  SSRIASLEARVSFLEAENARLRRAMADRSTGKGGPNLRRSEEMAGGRVARDVIEVSDGEE 77
           SSRIASLEARVSFLEAENARLRRAMADRSTGKGGPNLRRSEEMAGGRVARDVIEVSDGEE
Sbjct: 18  SSRIASLEARVSFLEAENARLRRAMADRSTGKGGPNLRRSEEMAGGRVARDVIEVSDGEE 77

Query: 78  EGMAVDVRKGRGAEEGMDAVATPRKRAALRVVIGESGDEYEIXXXXXXXXXXXXXXXXXX 137
           EGMAVDVRKGRGAEEGMDAVATPRKRAALRVVIGESGDEYEI                  
Sbjct: 78  EGMAVDVRKGRGAEEGMDAVATPRKRAALRVVIGESGDEYEIDDAKGDGDGDGGDHGSVS 137

Query: 138 XXXNVGLEDDDVTTALPDRKRAAALVVTSDSEDEVESQGGHGRRGKDGSRKRALRGVRDN 197
              NVGLEDDDVTTALPDRKRAAALVVTSDSEDEVESQGGHGRRGKDGSRKRALRGVRDN
Sbjct: 138 CGDNVGLEDDDVTTALPDRKRAAALVVTSDSEDEVESQGGHGRRGKDGSRKRALRGVRDN 197

Query: 198 GNEDKGVTRSRKRALRGISDNXXXXXXXXGVDGAHVVVTEIESSDDDMIPIREVVKKMRK 257
           GNEDKGVTRSRKRALRGISDN        GVDGAHVVVTEIESSDDDMIPIREVVKKMRK
Sbjct: 198 GNEDKGVTRSRKRALRGISDNEDEDEDEDGVDGAHVVVTEIESSDDDMIPIREVVKKMRK 257

Query: 258 ERASKXXXXXXETNGSSTPATRRSARLAKGQPKRAQSARRVLNFVEPKXXXXXXXXXXXX 317
           ERASK      ETNGSSTPATRRSARLAKGQPKRAQSARRVLNFVEPK            
Sbjct: 258 ERASKGGGGFGETNGSSTPATRRSARLAKGQPKRAQSARRVLNFVEPKDCEESASDSDED 317

Query: 318 XXXXXXXXXXXXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDYKDVMACIGRKRN 377
                       C                                IDYKDVMACIGRKRN
Sbjct: 318 DDLDDFIINDSDCSENSANSAEPEESDASAPSEGSSSELEESDNEIDYKDVMACIGRKRN 377

Query: 378 AKEWKYEAEMLSAFAAHPELCLKAVCALYRKQTKDEQEVKATILHNKQGFNQIDAARGSS 437
           AKEWKYEAEMLSAFAAHPELCLKAVCALYRKQTKDEQEVKATILHNKQGFNQIDAARGSS
Sbjct: 378 AKEWKYEAEMLSAFAAHPELCLKAVCALYRKQTKDEQEVKATILHNKQGFNQIDAARGSS 437

Query: 438 IAEFLLDGDTFGPLKKTVHDLEQYDRYALEFCHKLAARYSKQLFSIYQNKEDPYFHP 494
           IAEFLLDGDTFGPLKKTVHDLEQYDRYALEFCHKLAARYSKQLFSIYQNKEDPYFHP
Sbjct: 438 IAEFLLDGDTFGPLKKTVHDLEQYDRYALEFCHKLAARYSKQLFSIYQNKEDPYFHP 494



>Os01g0656900 Conserved hypothetical protein
          Length = 777

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 11/120 (9%)

Query: 378 AKEWKYEAEMLSAFAAHPELCLKAVCALYRKQ-----TKDEQEVKATILHNKQGFNQIDA 432
           ++ W+  A M+++   + EL ++A+CALYR++     + + Q+   T      G  +IDA
Sbjct: 663 SRHWETAAHMIASLRGNMELSMQALCALYRQRKLVIMSTEGQQTGTT------GLTKIDA 716

Query: 433 ARGSSIAEFLLDGDTFGPLKKTVHDLEQYDRYALEFCHKLAARYSKQLFSIYQNKEDPYF 492
            R   + EFLLDG   GPLK+T  +L  +D     F  K+A  +SK+LF IY+NK+DPYF
Sbjct: 717 VRAIRLLEFLLDGKLKGPLKRTAKELLSHDATGPTFLEKVALSFSKELFDIYKNKKDPYF 776



>Os04g0372300 
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 11/117 (9%)

Query: 381 WKYEAEMLSAFAAHPELCLKAVCALYRK-----QTKDEQEVKATILHNKQGFNQIDAARG 435
           W+ E  M+  F  + ELC+ A+CALYR+     ++  E+  K T L+  Q +      R 
Sbjct: 191 WESEENMVIRFMENVELCMGAICALYRQKKLMVESTCEERTKFTSLNESQAY------RA 244

Query: 436 SSIAEFLLDGDTFGPLKKTVHDLEQYDRYALEFCHKLAARYSKQLFSIYQNKEDPYF 492
           + +AEFLLDGD  GP+KK   DL  +D    +F  + A + SKQLF IY+NKED YF
Sbjct: 245 TQLAEFLLDGDINGPMKKNKEDLVNHDATGPKFIQEYAIQCSKQLFDIYRNKEDLYF 301



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,233,557
Number of extensions: 533018
Number of successful extensions: 1723
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1716
Number of HSP's successfully gapped: 4
Length of query: 494
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 389
Effective length of database: 11,553,331
Effective search space: 4494245759
Effective search space used: 4494245759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)