BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0219200 Os01g0219200|AK108579
         (417 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0219200  Conserved hypothetical protein                      657   0.0  

>Os01g0219200 Conserved hypothetical protein
          Length = 417

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/329 (96%), Positives = 319/329 (96%)

Query: 89  TCARVIIQSPVAGLQPSVCCPCEAPLRACRLPRASFLARRRPPFDWYEADMWTEVAKYLF 148
           TCARVIIQSPVAGLQPSVCCPCEAPLRACRLPRASFLARRRPPFDWYEADMWTEVAKYLF
Sbjct: 89  TCARVIIQSPVAGLQPSVCCPCEAPLRACRLPRASFLARRRPPFDWYEADMWTEVAKYLF 148

Query: 149 GAELVRLSSTCRWFRRLLADEFIWRHAFLRDLSLLPAAADRYPPRPLHRSWRLLYAAAFN 208
           GAELVRLSSTCRWFRRLLADEFIWRHAFLRDLSLLPAAADRYPPRPLHRSWRLLYAAAFN
Sbjct: 149 GAELVRLSSTCRWFRRLLADEFIWRHAFLRDLSLLPAAADRYPPRPLHRSWRLLYAAAFN 208

Query: 209 GAHSYWFRRSSRHIGAYRIGGFLLESPYMLLTAKLAVPQWLPPQEDGPQIAIEMTGACVL 268
           GAHSYWFRRSSRHIGAYRIGGFLLESPYMLLTAKLAVPQWLPPQEDGPQIAIEMTGACVL
Sbjct: 209 GAHSYWFRRSSRHIGAYRIGGFLLESPYMLLTAKLAVPQWLPPQEDGPQIAIEMTGACVL 268

Query: 269 PNARPGIWITDFHLVRCPNCTLNKCAGVLQVLDARHCELFLEQGFWNGTWEYEDLGDHYN 328
           PNARPGIWITDFHLVRCPNCTLNKCAGVLQVLDARHCELFLEQGFWNGTWEYEDLGDHYN
Sbjct: 269 PNARPGIWITDFHLVRCPNCTLNKCAGVLQVLDARHCELFLEQGFWNGTWEYEDLGDHYN 328

Query: 329 DEETPTAACAIFNASTRAHESISCVLHSKSWVRRCDDPQPKAHCRPYAVAXXXXXXXXXX 388
           DEETPTAACAIFNASTRAHESISCVLHSKSWVRRCDDPQPKAHCRPYAVA          
Sbjct: 329 DEETPTAACAIFNASTRAHESISCVLHSKSWVRRCDDPQPKAHCRPYAVALNSNLLSNSN 388

Query: 389 QGLVSRFQAMRDTTGNGQIVSIRIIQQIY 417
           QGLVSRFQAMRDTTGNGQIVSIRIIQQIY
Sbjct: 389 QGLVSRFQAMRDTTGNGQIVSIRIIQQIY 417



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,339,199
Number of extensions: 574343
Number of successful extensions: 1532
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1532
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)