BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0216700 Os01g0216700|Os01g0216700
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0216700                                                      231   2e-61

>Os01g0216700 
          Length = 228

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/207 (61%), Positives = 128/207 (61%)

Query: 22  MGISAALSWPWDYPTACGEIVALLRIGYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 81
           MGISAALSWPWDYPTACGEIVALLRIGYGC                              
Sbjct: 22  MGISAALSWPWDYPTACGEIVALLRIGYGCAAESPPNRSASPSSAMAHAPSPALSPSCSC 81

Query: 82  XXXXXXLIFGYIVFPLXXXXXXRTQGGGSARDLFIRREYGSTVVQFLVADXXXXXXXXXX 141
                 LIFGYIVFPL      RTQGGGSARDLFIRREYGSTVVQFLVAD          
Sbjct: 82  SSSSSSLIFGYIVFPLAAAAAARTQGGGSARDLFIRREYGSTVVQFLVADRSRSSSSPSM 141

Query: 142 XXXXGFGEEDAVTAXXXXXXXXXXXPAYFSSSKPSEGSTAAPAFALQYNGTTASKPREXX 201
               GFGEEDAVTA           PAYFSSSKPSEGSTAAPAFALQYNGTTASKPRE  
Sbjct: 142 AWRSGFGEEDAVTAGESGLELSLGLPAYFSSSKPSEGSTAAPAFALQYNGTTASKPREAA 201

Query: 202 XXXXXXXXXXRSFRRTRIYLILVLKWR 228
                     RSFRRTRIYLILVLKWR
Sbjct: 202 AAPVVGWPPVRSFRRTRIYLILVLKWR 228



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,185,939
Number of extensions: 89244
Number of successful extensions: 148
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)