Os01g0216700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0216700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.4 | 0.602 | 8.43 | -0.33 | 0.978 | 0.811 | 1.85 | 0.617 | -0.134 | 6.71 | 998.9 | 5945 | -- | -- |
| 164.75 | 0.598 | 8.44 | -0.344 | 0.989 | 0.894 | 1.8 | -- | -0.136 | 6.65 | 998.9 | 5944 | -- | -- |
| 170.64 | 0.608 | 8.44 | -0.31 | 1.01 | 0.818 | -- | 0.579 | -0.142 | 5.95 | 998.8 | 5930 | -- | -- |
| 170.91 | 0.609 | 8.45 | -0.343 | 1.02 | 0.906 | -- | -- | -0.134 | 5.94 | 998.9 | 5944 | -- | -- |
| 223.54 | 0.696 | 8.45 | -0.257 | -- | 0.753 | -- | 0.841 | -0.127 | -- | 998.6 | 5930 | -- | -- |
| 188.53 | 0.644 | 8.46 | -0.202 | 0.975 | -- | 1.9 | -- | -0.218 | 6.73 | -- | -- | -- | -- |
| 195.29 | 0.654 | 8.47 | -0.179 | 1.01 | -- | -- | -- | -0.227 | 5.99 | -- | -- | -- | -- |
| 224.13 | 0.697 | 8.46 | -0.306 | -- | 0.905 | -- | -- | -0.116 | -- | 998.8 | 5944 | -- | -- |
| 173.83 | 0.614 | 8.44 | -- | 1.02 | 0.874 | -- | -- | -0.103 | 5.95 | 998.9 | 5944 | -- | -- |
| 248.05 | 0.736 | 8.48 | -0.149 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 196.14 | 0.655 | 8.46 | -- | 1.01 | -- | -- | -- | -0.207 | 6 | -- | -- | -- | -- |
| 226.47 | 0.701 | 8.46 | -- | -- | 0.838 | -- | -- | -0.0882 | -- | 998.6 | 5966 | -- | -- |
| 248.64 | 0.736 | 8.48 | -- | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.01 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 24 | 157.50 | humidity | 80.0 | 720 | > th | dose independent | rect. | 20 | 2 |
| 35 | 158.73 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 36 | 158.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 38 | 158.77 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 39 | 158.83 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 42 | 159.21 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 68 | 160.24 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 88 | 161.12 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 97 | 161.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 100 | 161.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 101 | 161.59 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 102 | 161.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 116 | 161.83 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 118 | 161.84 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 138 | 162.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 12 |
| 150 | 162.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 158 | 162.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 162 | 162.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 166 | 162.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 170 | 162.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 181 | 162.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 197 | 163.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 200 | 163.02 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 201 | 163.02 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 210 | 163.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 212 | 163.11 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 223 | 163.18 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 227 | 163.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 244 | 163.26 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 245 | 163.26 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 257 | 163.32 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 20 |
| 260 | 163.32 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 281 | 163.46 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 302 | 163.65 | wind | 3.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 307 | 163.66 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 308 | 163.66 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 317 | 163.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 318 | 163.72 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 320 | 163.74 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 18 |
| 321 | 163.74 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 388 | 163.94 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 423 | 164.04 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 448 | 164.08 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 19 |
| 449 | 164.08 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 490 | 164.17 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 494 | 164.20 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 518 | 164.24 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 549 | 164.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 566 | 164.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 581 | 164.36 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 588 | 164.37 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 610 | 164.41 | humidity | 90.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 612 | 164.42 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 644 | 164.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 669 | 164.50 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 673 | 164.51 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 692 | 164.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 737 | 164.59 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 759 | 164.62 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 761 | 164.63 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 763 | 164.63 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 764 | 164.63 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 778 | 164.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 796 | 164.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 819 | 164.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 835 | 164.71 | humidity | 90.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 836 | 164.71 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 846 | 164.74 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 871 | 164.78 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 899 | 164.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 906 | 164.82 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 907 | 164.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 922 | 164.86 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 953 | 164.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 965 | 164.91 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |