BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0210800 Os01g0210800|AK069335
         (302 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0210800  Glycosyl transferase, family 4 protein              540   e-154

>Os01g0210800 Glycosyl transferase, family 4 protein
          Length = 302

 Score =  540 bits (1391), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/302 (93%), Positives = 283/302 (93%)

Query: 1   MKIHHFRRRGKLMSPFYRKPTPAMGGLFFVPIGIFVARRQVGSSTGVNGAAIITLIFAMV 60
           MKIHHFRRRGKLMSPFYRKPTPAMGGLFFVPIGIFVARRQVGSSTGVNGAAIITLIFAMV
Sbjct: 1   MKIHHFRRRGKLMSPFYRKPTPAMGGLFFVPIGIFVARRQVGSSTGVNGAAIITLIFAMV 60

Query: 61  GFLDDISNLVMDCNRKIPHWMRLFVQIVAGIYLSIWLSSTNISTPYNTKFLVPLPPPLGL 120
           GFLDDISNLVMDCNRKIPHWMRLFVQIVAGIYLSIWLSSTNISTPYNTKFLVPLPPPLGL
Sbjct: 61  GFLDDISNLVMDCNRKIPHWMRLFVQIVAGIYLSIWLSSTNISTPYNTKFLVPLPPPLGL 120

Query: 121 AFIGKIYLVLAAICSLSMGTGVTLVDHLDXXXXXXXXXXXXXXXXXXXPICSEMSVFGAS 180
           AFIGKIYLVLAAICSLSMGTGVTLVDHLD                   PICSEMSVFGAS
Sbjct: 121 AFIGKIYLVLAAICSLSMGTGVTLVDHLDGLAGGVAALALAGLSVASLPICSEMSVFGAS 180

Query: 181 MSGACTGFLFHNRYRASIVMGRVGSFALGGAIATIAACSGMFIPMFIACSIFLLELLLVI 240
           MSGACTGFLFHNRYRASIVMGRVGSFALGGAIATIAACSGMFIPMFIACSIFLLELLLVI
Sbjct: 181 MSGACTGFLFHNRYRASIVMGRVGSFALGGAIATIAACSGMFIPMFIACSIFLLELLLVI 240

Query: 241 FQVPFQMAKKHFLGTNRYPLRILPSYYFLKSWGIKEPYIVAGAYIISCLLTAFAGYLGLV 300
           FQVPFQMAKKHFLGTNRYPLRILPSYYFLKSWGIKEPYIVAGAYIISCLLTAFAGYLGLV
Sbjct: 241 FQVPFQMAKKHFLGTNRYPLRILPSYYFLKSWGIKEPYIVAGAYIISCLLTAFAGYLGLV 300

Query: 301 SA 302
           SA
Sbjct: 301 SA 302



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.145    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,588,389
Number of extensions: 368390
Number of successful extensions: 924
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)