BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0208800 Os01g0208800|AK109734
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0208800  Similar to Phosphoenolpyruvate carboxylase (Fr...   519   e-148

>Os01g0208800 Similar to Phosphoenolpyruvate carboxylase (Fragment)
          Length = 270

 Score =  519 bits (1336), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/270 (95%), Positives = 259/270 (95%)

Query: 1   MPGSPLAKTISRRSMVTRKKGHSSYISRSVARPPPASLCCMACLNAAPKPSHTGRWNRVC 60
           MPGSPLAKTISRRSMVTRKKGHSSYISRSVARPPPASLCCMACLNAAPKPSHTGRWNRVC
Sbjct: 1   MPGSPLAKTISRRSMVTRKKGHSSYISRSVARPPPASLCCMACLNAAPKPSHTGRWNRVC 60

Query: 61  VHAKIHGMARSDSMPPPGFRFDGRLPMFIRPYSVSGVAARKYSTKRGSWNTMERYSSVAT 120
           VHAKIHGMARSDSMPPPGFRFDGRLPMFIRPYSVSGVAARKYSTKRGSWNTMERYSSVAT
Sbjct: 61  VHAKIHGMARSDSMPPPGFRFDGRLPMFIRPYSVSGVAARKYSTKRGSWNTMERYSSVAT 120

Query: 121 VAMSSSRRRHSGFGDTGGFMPCSRVAAVNLCSVRKQRFSSPNDFSMTSPWTVTRSEPLTV 180
           VAMSSSRRRHSGFGDTGGFMPCSRVAAVNLCSVRKQRFSSPNDFSMTSPWTVTRSEPLTV
Sbjct: 121 VAMSSSRRRHSGFGDTGGFMPCSRVAAVNLCSVRKQRFSSPNDFSMTSPWTVTRSEPLTV 180

Query: 181 FGGWDRMARWLGXXXXXXXXXXXWKMVSFTPCRSATPTISSWALYSCHAADSRPASLPES 240
           FGGWDRMARWLG           WKMVSFTPCRSATPTISSWALYSCHAADSRPASLPES
Sbjct: 181 FGGWDRMARWLGPPPRPTVPPRPWKMVSFTPCRSATPTISSWALYSCHAADSRPASLPES 240

Query: 241 EYPIMISCFPSIRSLYQSTEKRSSMVARAC 270
           EYPIMISCFPSIRSLYQSTEKRSSMVARAC
Sbjct: 241 EYPIMISCFPSIRSLYQSTEKRSSMVARAC 270



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.129    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,257,655
Number of extensions: 440268
Number of successful extensions: 1199
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)