BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0196600 Os01g0196600|U25430
         (479 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0196600  Similar to 260 kDa major acidic fibroblast gro...   828   0.0  

>Os01g0196600 Similar to 260 kDa major acidic fibroblast growth factor-stimulated
           phosphoprotein (Fragment)
          Length = 479

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/415 (97%), Positives = 404/415 (97%)

Query: 65  ILPRTPLSXXXXXXXXXXXQVKLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAA 124
           ILPRTPLS           QVKLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAA
Sbjct: 65  ILPRTPLSAAPAPAAAARAQVKLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAA 124

Query: 125 TGLVPIFPTLTFPNHYSIATGLYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWV 184
           TGLVPIFPTLTFPNHYSIATGLYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWV
Sbjct: 125 TGLVPIFPTLTFPNHYSIATGLYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWV 184

Query: 185 TAADQGIQAATYFWPGSEVKKGSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQ 244
           TAADQGIQAATYFWPGSEVKKGSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQ
Sbjct: 185 TAADQGIQAATYFWPGSEVKKGSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQ 244

Query: 245 FLTLYFEDPDHQGHQVGPDDPAITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGM 304
           FLTLYFEDPDHQGHQVGPDDPAITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGM
Sbjct: 245 FLTLYFEDPDHQGHQVGPDDPAITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGM 304

Query: 305 VGTCDKKLVFLDELAPWIKLEEDWVLSMTPLLAIRPPDDMSLPDVVAKMNEGLGSGKVEN 364
           VGTCDKKLVFLDELAPWIKLEEDWVLSMTPLLAIRPPDDMSLPDVVAKMNEGLGSGKVEN
Sbjct: 305 VGTCDKKLVFLDELAPWIKLEEDWVLSMTPLLAIRPPDDMSLPDVVAKMNEGLGSGKVEN 364

Query: 365 GEYLRMYLKEDLPSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSM 424
           GEYLRMYLKEDLPSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSM
Sbjct: 365 GEYLRMYLKEDLPSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSM 424

Query: 425 RTIFIAHGPRFEGGRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPDTILLPSE 479
           RTIFIAHGPRFEGGRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPDTILLPSE
Sbjct: 425 RTIFIAHGPRFEGGRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPDTILLPSE 479



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,432,735
Number of extensions: 783887
Number of successful extensions: 1317
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 374
Effective length of database: 11,553,331
Effective search space: 4320945794
Effective search space used: 4320945794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)