BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0187700 Os01g0187700|AK101445
         (97 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0187700  Conserved hypothetical protein                      160   2e-40
Os07g0692050  Conserved hypothetical protein                      153   3e-38

>Os01g0187700 Conserved hypothetical protein
          Length = 97

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/97 (85%), Positives = 83/97 (85%)

Query: 1  MPLPLPIDLISTPPAPGNGAGEPTTGIPAYGVTRSAHWRTTWSATAPRPQTRRASRTMAL 60
          MPLPLPIDLISTPPAPGNGAGEPTTGIPAYGVTRSAHWRTTWSATAPRPQTRRASRTMAL
Sbjct: 1  MPLPLPIDLISTPPAPGNGAGEPTTGIPAYGVTRSAHWRTTWSATAPRPQTRRASRTMAL 60

Query: 61 VLNDTVTGPPPPWPFXXXXXXXXXXXXXXGSGEQATV 97
          VLNDTVTGPPPPWPF              GSGEQATV
Sbjct: 61 VLNDTVTGPPPPWPFSAASRARLSVVAMAGSGEQATV 97



>Os07g0692050 Conserved hypothetical protein
          Length = 97

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 80/97 (82%)

Query: 1  MPLPLPIDLISTPPAPGNGAGEPTTGIPAYGVTRSAHWRTTWSATAPRPQTRRASRTMAL 60
          MPLPLPIDLISTPPAPGNGAGEPTTGIPAYG+TRS HWRTTWSATAPRPQTRRAS+TMAL
Sbjct: 1  MPLPLPIDLISTPPAPGNGAGEPTTGIPAYGMTRSTHWRTTWSATAPRPQTRRASKTMAL 60

Query: 61 VLNDTVTGPPPPWPFXXXXXXXXXXXXXXGSGEQATV 97
          VLNDT TGPPPPWPF               SGEQATV
Sbjct: 61 VLNDTATGPPPPWPFSAASRARLSVVAMASSGEQATV 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,444,678
Number of extensions: 208580
Number of successful extensions: 906
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)