BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0186600 Os01g0186600|AK108138
         (208 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0186600  Conserved hypothetical protein                      315   2e-86
Os01g0186500                                                      160   4e-40

>Os01g0186600 Conserved hypothetical protein
          Length = 208

 Score =  315 bits (806), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/195 (83%), Positives = 162/195 (83%)

Query: 1   MDMISGMLRPAFDRITPXXXXXXXXXXXXXXXXTGSFNSRTGLLTAADGEEETPLSPQAI 60
           MDMISGMLRPAFDRITP                TGSFNSRTGLLTAADGEEETPLSPQAI
Sbjct: 1   MDMISGMLRPAFDRITPSIASAAVFSFSRVVSFTGSFNSRTGLLTAADGEEETPLSPQAI 60

Query: 61  ETTASTGGVGAFDIEAPAAMTTTPDQAVLRDDVRGDDELIRRLSKSVQPVCLFCAAASLT 120
           ETTASTGGVGAFDIEAPAAMTTTPDQAVLRDDVRGDDELIRRLSKSVQPVCLFCAAASLT
Sbjct: 61  ETTASTGGVGAFDIEAPAAMTTTPDQAVLRDDVRGDDELIRRLSKSVQPVCLFCAAASLT 120

Query: 121 MSVNXXXXXXXXXXXXXXXXXFVCLGLFASLGLSMYTIVSRPGDAAVARVQKWAMVLALA 180
           MSVN                 FVCLGLFASLGLSMYTIVSRPGDAAVARVQKWAMVLALA
Sbjct: 121 MSVNLPASGGAGGALYGATLAFVCLGLFASLGLSMYTIVSRPGDAAVARVQKWAMVLALA 180

Query: 181 FVLVSFTLRMWPVLV 195
           FVLVSFTLRMWPVLV
Sbjct: 181 FVLVSFTLRMWPVLV 195



>Os01g0186500 
          Length = 250

 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/210 (53%), Positives = 117/210 (55%), Gaps = 34/210 (16%)

Query: 1   MDMISGMLRPAFDRITPXXXXXXXXXXXXXXXXTGSFNSRTGLLTAADGEEETPLSPQAI 60
           MD ISGM RP FDRI P                TGSFNSRTGLL A DGEEET       
Sbjct: 1   MDTISGMFRPVFDRIRPSIASAAELSFSRVVSFTGSFNSRTGLLAAGDGEEET------- 53

Query: 61  ETTASTGGVGAFDIEAPAAMTTTPDQAVLRDDVRGDDELI--------------RRLSKS 106
            T A T    AFDIEAPA   TTPDQAV RDD     E                +R+SK 
Sbjct: 54  -TPAQTA---AFDIEAPAT-ATTPDQAV-RDDAAAAQEGEAAGAAAADDDADEPKRVSKI 107

Query: 107 VQPVCLFCAAASLTMSVNXXXXXXXXXXXXXXXXXFVCLGLFASLGL------SMYTIVS 160
           VQ VCLF A+ASL MSVN                 FVCLGLF SLGL      SMYTIVS
Sbjct: 108 VQTVCLFVASASLAMSVNLPASGAGGALYGATLA-FVCLGLFTSLGLFTSLGLSMYTIVS 166

Query: 161 RPGDAAVARVQKWAMVLALAFVLVSFTLRM 190
           RPGDAAVA VQKWAMVLA+A V  SFTLR+
Sbjct: 167 RPGDAAVAMVQKWAMVLAMASVPASFTLRL 196



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,123,644
Number of extensions: 169108
Number of successful extensions: 524
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)