BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0184700 Os01g0184700|AK061353
         (210 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0184700  Conserved hypothetical protein                      258   3e-69
Os01g0715800  Conserved hypothetical protein                       86   2e-17

>Os01g0184700 Conserved hypothetical protein
          Length = 210

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 142/210 (67%)

Query: 1   MADDVVASPEESLTALLLEPAASPRDDPSVEVRLYRRGAGPVAVFRSALVGPRRDRLQVR 60
           MADDVVASPEESLTALLLEPAASPRDDPSVEVRLYRRGAGPVAVFRSALVGPRRDRLQVR
Sbjct: 1   MADDVVASPEESLTALLLEPAASPRDDPSVEVRLYRRGAGPVAVFRSALVGPRRDRLQVR 60

Query: 61  AIQAEHGLRALFAFKPESSLRGIRIRPGPAAAAGCSAVPFRDGAVIALDGEPKGSWTKPX 120
           AIQAEHGLRALFAFKPESSLRGIRIRPGPAAAAGCSAVPFRDGAVIALDGEPKGSWTKP 
Sbjct: 61  AIQAEHGLRALFAFKPESSLRGIRIRPGPAAAAGCSAVPFRDGAVIALDGEPKGSWTKPA 120

Query: 121 XXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQGRLLHD 180
                             K                                RAQGRLLHD
Sbjct: 121 AVIVAGVLVPAVMVAVAVKGCRSRCGRRGWSTPSSRRGSSPAPSSSTLASGRAQGRLLHD 180

Query: 181 PSPIACXXXXXXXXXXXXXXXXXRNLYEKK 210
           PSPIAC                 RNLYEKK
Sbjct: 181 PSPIACSSSSPSTTSPSLFFPLSRNLYEKK 210



>Os01g0715800 Conserved hypothetical protein
          Length = 205

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 2/101 (1%)

Query: 19  EPAASPRDDPSVEVRLYRRGAGPVAVFRSALVGPRRDRLQVRAIQAEHGLRALFAFKPES 78
           +P +     P VEV+L+RRG GPVAVFRS L G  +D+L+V  I  +HGL+++F F P S
Sbjct: 39  KPGSEAAAKPEVEVQLFRRGRGPVAVFRSPLGGYTQDQLEVGDILEQHGLKSVFVFHPAS 98

Query: 79  SLRGIRIRPGPAAAAGCSAVPFRDGAVIALDGEPKGSWTKP 119
             RG+ IR  P    G S + +  G+ I LDGEPK S  KP
Sbjct: 99  RTRGVAIRFHP--RNGRSLLTYVAGSTIFLDGEPKDSLLKP 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,519,144
Number of extensions: 205145
Number of successful extensions: 558
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)