BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0183400 Os01g0183400|Os01g0183400
         (238 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0183400  Histone-fold domain containing protein              133   1e-31

>Os01g0183400 Histone-fold domain containing protein
          Length = 238

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 87/199 (43%)

Query: 40  GEREEAIDAVAGEAGEVMKEVVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 99
           GEREEAIDAVAGEAGEVMKEVVEG                                   P
Sbjct: 40  GEREEAIDAVAGEAGEVMKEVVEGEREEANAMADEADEAMEPEGEREEEADAVADEATEP 99

Query: 100 MEQVEGEGEDGDAAAQRPALPLGXXXXXXXXXXXXXXXTNEXXXXXXXXTELFVGSLXXX 159
           MEQVEGEGEDGDAAAQRPALPLG               TNE        TELFVGSL   
Sbjct: 100 MEQVEGEGEDGDAAAQRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAG 159

Query: 160 XXXXXXXXXXXXXXXXXXXXXXXXXXPTADFLLDCLXXXXXXXXXXXXXXXXXXXXXXXX 219
                                     PTADFLLDCL                        
Sbjct: 160 AHRAASRRGRRAVRAVHVRAAAREHRPTADFLLDCLPAAEEAAPARAAAAGPSRGGGRGE 219

Query: 220 XKPLPRGTRRIDAFFQKTT 238
            KPLPRGTRRIDAFFQKTT
Sbjct: 220 AKPLPRGTRRIDAFFQKTT 238



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,818,540
Number of extensions: 43855
Number of successful extensions: 141
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)