Os01g0183400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os01g0183400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.69 | 0.736 | 4.73 | 1.31 | 0.321 | -0.741 | -0.185 | 0.622 | -0.128 | 13.8 | 22.16 | 777 | -- | -- |
| 246.88 | 0.732 | 4.74 | 1.14 | 0.311 | -0.768 | -0.298 | -- | -0.171 | 14 | 22.1 | 798 | -- | -- |
| 245.77 | 0.73 | 4.73 | 1.31 | 0.319 | -0.737 | -- | 0.655 | -0.128 | 13.5 | 22.16 | 784 | -- | -- |
| 247.13 | 0.732 | 4.75 | 1.11 | 0.315 | -0.755 | -- | -- | -0.178 | 13.5 | 22 | 798 | -- | -- |
| 251.48 | 0.739 | 4.72 | 1.34 | -- | -0.787 | -- | 0.72 | -0.11 | -- | 22.2 | 839 | -- | -- |
| 270.74 | 0.771 | 4.8 | 0.866 | 0.425 | -- | -0.146 | -- | -0.42 | 12.5 | -- | -- | -- | -- |
| 270.82 | 0.771 | 4.8 | 0.86 | 0.425 | -- | -- | -- | -0.421 | 12.4 | -- | -- | -- | -- |
| 252.89 | 0.741 | 4.74 | 1.12 | -- | -0.81 | -- | -- | -0.161 | -- | 22.1 | 846 | -- | -- |
| 277.09 | 0.775 | 4.78 | -- | 0.324 | -0.53 | -- | -- | -0.356 | 13.2 | 22.34 | 771 | -- | -- |
| 282.17 | 0.785 | 4.8 | 0.845 | -- | -- | -- | -- | -0.428 | -- | -- | -- | -- | -- |
| 290.3 | 0.797 | 4.82 | -- | 0.413 | -- | -- | -- | -0.517 | 12.3 | -- | -- | -- | -- |
| 283.22 | 0.784 | 4.78 | -- | -- | -0.593 | -- | -- | -0.339 | -- | 22.35 | 841 | -- | -- |
| 301.01 | 0.81 | 4.83 | -- | -- | -- | -- | -- | -0.522 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 2 | 236.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 45 | 242.45 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 48 | 242.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 63 | 242.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 105 | 244.01 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 127 | 244.23 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 153 | 244.61 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 166 | 244.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 274 | 245.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 315 | 246.21 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 339 | 246.38 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 347 | 246.47 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 378 | 246.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 414 | 247.03 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 514 | 247.63 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 531 | 247.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 552 | 247.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 581 | 248.02 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 595 | 248.07 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 11 | NA |
| 597 | 248.10 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 612 | 248.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 630 | 248.23 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 11 | NA |
| 645 | 248.31 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 647 | 248.31 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 667 | 248.39 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 686 | 248.46 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 750 | 248.64 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 760 | 248.68 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 766 | 248.69 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 777 | 248.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 790 | 248.74 | temperature | 15 | 30 | > th | dose dependent | sin | 6 | NA |
| 816 | 248.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 849 | 248.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 932 | 248.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 948 | 249.00 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |
| 954 | 249.01 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 13 |
| 996 | 249.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |