BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0176500 Os01g0176500|AK102552
(832 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0176500 Conserved hypothetical protein 1464 0.0
Os02g0686200 125 9e-29
Os05g0408000 116 6e-26
>Os01g0176500 Conserved hypothetical protein
Length = 832
Score = 1464 bits (3789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/832 (86%), Positives = 719/832 (86%)
Query: 1 MAATAFTEEEKAVDDSLGYPKAYARLCRXXXXXXXXXXXXXXXXXXXXXXVLHPHEAMRA 60
MAATAFTEEEKAVDDSLGYPKAYARLCR VLHPHEAMRA
Sbjct: 1 MAATAFTEEEKAVDDSLGYPKAYARLCRGGGGGGGGLPYGHGPPHGFLPYVLHPHEAMRA 60
Query: 61 KDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSA 120
KDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSA
Sbjct: 61 KDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSA 120
Query: 121 SPLAWDIDHWFPCARGGRTVPSNLRIVQAQVCRKKHNKLEFLVPWWDLQLGISVNQFLSI 180
SPLAWDIDHWFPCARGGRTVPSNLRIVQAQVCRKKHNKLEFLVPWWDLQLGISVNQFLSI
Sbjct: 121 SPLAWDIDHWFPCARGGRTVPSNLRIVQAQVCRKKHNKLEFLVPWWDLQLGISVNQFLSI 180
Query: 181 FASKNADFRNRAFTFLFVDGASEELTSMQAVEAHAFPHHFSDLTKKVGLAPAAIVSSRGS 240
FASKNADFRNRAFTFLFVDGASEELTSMQAVEAHAFPHHFSDLTKKVGLAPAAIVSSRGS
Sbjct: 181 FASKNADFRNRAFTFLFVDGASEELTSMQAVEAHAFPHHFSDLTKKVGLAPAAIVSSRGS 240
Query: 241 DSSVLKSLDANRPLRPNYPLIAAKKFTGEKDENFNVPMSNHGPNSTKENNNPDADGYISN 300
DSSVLKSLDANRPLRPNYPLIAAKKFTGEKDENFNVPMSNHGPNSTKENNNPDADGYISN
Sbjct: 241 DSSVLKSLDANRPLRPNYPLIAAKKFTGEKDENFNVPMSNHGPNSTKENNNPDADGYISN 300
Query: 301 PYLSIATARDSLRQREEAKKKQXXXXXXXXXXXXXKQKNEEERVAIQDMEALLIKXXXXX 360
PYLSIATARDSLRQREEAKKKQ KQKNEEERVAIQDMEALLIK
Sbjct: 301 PYLSIATARDSLRQREEAKKKQAELTELENEATELKQKNEEERVAIQDMEALLIKRRRRV 360
Query: 361 XXXXXLAEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSE 420
LAEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSE
Sbjct: 361 EKCRRLAEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSE 420
Query: 421 TELRRKYQQKDELEKQIKPFTDQARKRYRVDDDGXXXXXXXXXXXXXXXVKYFPGIRLRS 480
TELRRKYQQKDELEKQIKPFTDQARKRYRVDDDG VKYFPGIRLRS
Sbjct: 421 TELRRKYQQKDELEKQIKPFTDQARKRYRVDDDGLLEERHSLEERHSERVKYFPGIRLRS 480
Query: 481 RNPLKQELRVFLEEDQRASDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTV 540
RNPLKQELRVFLEEDQRASDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTV
Sbjct: 481 RNPLKQELRVFLEEDQRASDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTV 540
Query: 541 DTERGRASVREKLEHLAIKXXXXXXXXXXXXXXXXXXATSTPVRSRDGNGKGKAAMVQCE 600
DTERGRASVREKLEHLAIK ATSTPVRSRDGNGKGKAAMVQCE
Sbjct: 541 DTERGRASVREKLEHLAIKERQRGRRRERTMSSRGSRATSTPVRSRDGNGKGKAAMVQCE 600
Query: 601 SETEXXXXXXXXXXXXXXXXXXXXXXGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDA 660
SETE GMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDA
Sbjct: 601 SETERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDA 660
Query: 661 NMNHTGKGTVDKWXXXXXXXXXXXXXPAAAYHSSEDHNTADEIASDEHQMQSRIDDESCR 720
NMNHTGKGTVDKW PAAAYHSSEDHNTADEIASDEHQMQSRIDDESCR
Sbjct: 661 NMNHTGKGTVDKWLQMLMEDQQQQEDPAAAYHSSEDHNTADEIASDEHQMQSRIDDESCR 720
Query: 721 NEITECSDEIVEVGGDGATEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSK 780
NEITECSDEIVEVGGDGATEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSK
Sbjct: 721 NEITECSDEIVEVGGDGATEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSK 780
Query: 781 ILGMRRGVECMSRKPKVVGDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK 832
ILGMRRGVECMSRKPKVVGDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK
Sbjct: 781 ILGMRRGVECMSRKPKVVGDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK 832
>Os02g0686200
Length = 114
Score = 125 bits (315), Expect = 9e-29, Method: Composition-based stats.
Identities = 56/68 (82%), Positives = 61/68 (89%)
Query: 56 EAMRAKDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYL 115
EA+RAKDLNEMFPVA+AE AP NPRGFANLLWKQL+HLGN GFD ALFRV+AY N+LYL
Sbjct: 46 EAIRAKDLNEMFPVANAEVAPMLNPRGFANLLWKQLNHLGNTGFDLALFRVNAYSNMLYL 105
Query: 116 HADSASPL 123
HADS SPL
Sbjct: 106 HADSTSPL 113
>Os05g0408000
Length = 132
Score = 116 bits (291), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/54 (92%), Positives = 51/54 (94%)
Query: 79 NPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSASPLAWDIDHWFP 132
NPRGF NLL KQLDHLGNA FDPALFRVDAYGNVLYLHAD+ASPLAWDIDHWFP
Sbjct: 73 NPRGFVNLLCKQLDHLGNARFDPALFRVDAYGNVLYLHADTASPLAWDIDHWFP 126
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,393,129
Number of extensions: 958959
Number of successful extensions: 1880
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1878
Number of HSP's successfully gapped: 3
Length of query: 832
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 723
Effective length of database: 11,344,475
Effective search space: 8202055425
Effective search space used: 8202055425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)