BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0172600 Os01g0172600|AK058554
         (165 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0172600  Conserved hypothetical protein                      109   1e-24

>Os01g0172600 Conserved hypothetical protein
          Length = 165

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 111 PPVQLRVPQGHGQDEQHRRQDRQPGRDQEEVLQVQLGAVAQSTVNFVIDRVTCPE 165
           PPVQLRVPQGHGQDEQHRRQDRQPGRDQEEVLQVQLGAVAQSTVNFVIDRVTCPE
Sbjct: 111 PPVQLRVPQGHGQDEQHRRQDRQPGRDQEEVLQVQLGAVAQSTVNFVIDRVTCPE 165




 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%)

Query: 1  ARNTSWCSHHRADGLHLFPVPALQLHGDGERGPDDQ 36
          ARNTSWCSHHRADGLHLFPVPALQLHGDGERGPDDQ
Sbjct: 1  ARNTSWCSHHRADGLHLFPVPALQLHGDGERGPDDQ 36



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,813,252
Number of extensions: 109922
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)