BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0171200 Os01g0171200|AK109475
         (453 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0171200  Conserved hypothetical protein                      739   0.0  

>Os01g0171200 Conserved hypothetical protein
          Length = 453

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/453 (82%), Positives = 373/453 (82%)

Query: 1   MGYGFSTKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHNFPHAS 60
           MGYGFSTKLT                                         ALHNFPHAS
Sbjct: 1   MGYGFSTKLTAFFWPWRFSPWRFSPPPSTPMPRPHLPPPGAPSPTPMATAPALHNFPHAS 60

Query: 61  SSRRSPTLCDGLPLPHRHISTXXXXXXXXXXXXKTIVKLASSIGTVVPVALSIVPYFYQV 120
           SSRRSPTLCDGLPLPHRHIST            KTIVKLASSIGTVVPVALSIVPYFYQV
Sbjct: 61  SSRRSPTLCDGLPLPHRHISTAPPPGPSPASPPKTIVKLASSIGTVVPVALSIVPYFYQV 120

Query: 121 YTGNFERTIEVYGAPAMLAGSINSIIWLTYSIMASKKDXXXXXXXXXXXXCMSTFTYLMC 180
           YTGNFERTIEVYGAPAMLAGSINSIIWLTYSIMASKKD            CMSTFTYLMC
Sbjct: 121 YTGNFERTIEVYGAPAMLAGSINSIIWLTYSIMASKKDLNLALILMHALLCMSTFTYLMC 180

Query: 181 ICACKRATKEGYILGAFFIGCLSAISIVVHWDLNPSKVVKIIFRCFGGISLLSCHYILLN 240
           ICACKRATKEGYILGAFFIGCLSAISIVVHWDLNPSKVVKIIFRCFGGISLLSCHYILLN
Sbjct: 181 ICACKRATKEGYILGAFFIGCLSAISIVVHWDLNPSKVVKIIFRCFGGISLLSCHYILLN 240

Query: 241 DILGSVPKRSQKVATGFDLILSCITNLVTFIITFHDHPEHTTSLITSGVGFXXXXXXXXX 300
           DILGSVPKRSQKVATGFDLILSCITNLVTFIITFHDHPEHTTSLITSGVGF         
Sbjct: 241 DILGSVPKRSQKVATGFDLILSCITNLVTFIITFHDHPEHTTSLITSGVGFVLNVVEIVL 300

Query: 301 XXXXXXMGYFFPLSEHPDADVEASRHISATRVTGVGMIPLEDALGTPETDDFIAVLTHEP 360
                 MGYFFPLSEHPDADVEASRHISATRVTGVGMIPLEDALGTPETDDFIAVLTHEP
Sbjct: 301 LVIVTIMGYFFPLSEHPDADVEASRHISATRVTGVGMIPLEDALGTPETDDFIAVLTHEP 360

Query: 361 QVPQFEVSYLILQVRNEFEIYSLRSMVNPNVQIITRVLFVEVIQRTMMRIERDHYIQILL 420
           QVPQFEVSYLILQVRNEFEIYSLRSMVNPNVQIITRVLFVEVIQRTMMRIERDHYIQILL
Sbjct: 361 QVPQFEVSYLILQVRNEFEIYSLRSMVNPNVQIITRVLFVEVIQRTMMRIERDHYIQILL 420

Query: 421 QASGIAAAEPYPLMLRDVEIHYQTIRNQHEALP 453
           QASGIAAAEPYPLMLRDVEIHYQTIRNQHEALP
Sbjct: 421 QASGIAAAEPYPLMLRDVEIHYQTIRNQHEALP 453



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,875,763
Number of extensions: 410366
Number of successful extensions: 1131
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 349
Effective length of database: 11,605,545
Effective search space: 4050335205
Effective search space used: 4050335205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)