Os01g0171200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0171200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.55 | 0.547 | 3.05 | 0.0149 | 0.202 | 0.228 | -0.207 | 1.9 | 0.00533 | 3.82 | 30.99 | 779 | -- | -- |
| 135.62 | 0.542 | 3.07 | -0.168 | 0.196 | 0.435 | -0.226 | -- | 0.00853 | 3.77 | 30.5 | 788 | -- | -- |
| 135.66 | 0.542 | 3.05 | 0.033 | 0.208 | 0.224 | -- | 2.09 | 0.00564 | 4.04 | 31.14 | 768 | -- | -- |
| 135.71 | 0.543 | 3.07 | -0.165 | 0.208 | 0.456 | -- | -- | 0.00877 | 4.24 | 30.5 | 770 | -- | -- |
| 137.54 | 0.546 | 3.05 | 0.0501 | -- | 0.181 | -- | 1.87 | 0.0147 | -- | 31.2 | 859 | -- | -- |
| 140.37 | 0.555 | 3.09 | -0.105 | 0.165 | -- | -0.283 | -- | -0.0411 | 2.24 | -- | -- | -- | -- |
| 140.67 | 0.555 | 3.09 | -0.0968 | 0.164 | -- | -- | -- | -0.0394 | 2.2 | -- | -- | -- | -- |
| 137.57 | 0.546 | 3.07 | -0.149 | -- | 0.376 | -- | -- | 0.0142 | -- | 30.5 | 898 | -- | -- |
| 136.41 | 0.544 | 3.07 | -- | 0.204 | 0.431 | -- | -- | 0.0233 | 4.17 | 30.53 | 763 | -- | -- |
| 142.28 | 0.557 | 3.08 | -0.0899 | -- | -- | -- | -- | -0.0355 | -- | -- | -- | -- | -- |
| 140.92 | 0.555 | 3.08 | -- | 0.162 | -- | -- | -- | -0.0287 | 2.19 | -- | -- | -- | -- |
| 138.22 | 0.548 | 3.07 | -- | -- | 0.361 | -- | -- | 0.0304 | -- | 30.6 | 875 | -- | -- |
| 142.49 | 0.557 | 3.08 | -- | -- | -- | -- | -- | -0.0255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.63 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 16 |
| 3 | 123.07 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 16 |
| 7 | 127.19 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 14 |
| 11 | 128.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 12 | 128.32 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 10 |
| 18 | 128.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 23 | 128.76 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 1 |
| 42 | 128.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 55 | 129.34 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 9 |
| 60 | 129.43 | temperature | 30 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 75 | 129.46 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 10 |
| 83 | 129.56 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 84 | 129.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 86 | 129.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 112 | 129.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 194 | 130.22 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 1 |
| 211 | 130.26 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 286 | 130.38 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 310 | 130.50 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 466 | 131.13 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 520 | 131.36 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 521 | 131.36 | humidity | 70 | 30 | < th | dose dependent | sin | 10 | NA |
| 531 | 131.48 | radiation | 30 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 660 | 132.11 | temperature | 30 | 30 | > th | dose independent | rect. | 18 | 1 |
| 693 | 132.30 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 708 | 132.37 | humidity | 60 | 30 | > th | dose independent | sin | 10 | NA |
| 724 | 132.39 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 802 | 132.87 | humidity | 70 | 270 | < th | dose independent | sin | 11 | NA |
| 823 | 132.94 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 7 |
| 833 | 133.01 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 847 | 133.06 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 12 |
| 855 | 133.11 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 856 | 133.12 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 888 | 133.37 | wind | 3 | 30 | > th | dose independent | rect. | 18 | 1 |
| 911 | 133.49 | radiation | 40 | 10 | < th | dose independent | sin | 11 | NA |
| 969 | 133.60 | humidity | 60 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 972 | 133.61 | wind | 5 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 978 | 133.63 | atmosphere | 995 | 30 | > th | dose independent | rect. | 19 | 23 |
| 979 | 133.63 | wind | 3 | 30 | > th | dose dependent | rect. | 18 | 1 |