BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0161200 Os01g0161200|AK065680
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0161200  Conserved hypothetical protein                      216   4e-57

>Os01g0161200 Conserved hypothetical protein
          Length = 143

 Score =  216 bits (550), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/143 (79%), Positives = 113/143 (79%)

Query: 1   MAGDEVDAPKALLPPRPAILVASAGQHLPRSKGKWYAPPSYGRSRRARPVRCPDAAXXXX 60
           MAGDEVDAPKALLPPRPAILVASAGQHLPRSKGKWYAPPSYGRSRRARPVRCPDAA    
Sbjct: 1   MAGDEVDAPKALLPPRPAILVASAGQHLPRSKGKWYAPPSYGRSRRARPVRCPDAARRPS 60

Query: 61  XXXXXXXXXXVGLVDLSPFACLRFXXXXXXXXXXXXXXXXAVHTPRSPIPSSSEVHCHLQ 120
                     VGLVDLSPFACLRF                AVHTPRSPIPSSSEVHCHLQ
Sbjct: 61  SRTPPEPEPPVGLVDLSPFACLRFTSSTPHPTSIPTTTPPAVHTPRSPIPSSSEVHCHLQ 120

Query: 121 LAGEKTRQVGTARWRPGGQGKSQ 143
           LAGEKTRQVGTARWRPGGQGKSQ
Sbjct: 121 LAGEKTRQVGTARWRPGGQGKSQ 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,097,519
Number of extensions: 181290
Number of successful extensions: 630
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)