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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0161200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0348) R2 : 0.355
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.698 (0.0867) R2dC : 0.0969 R2C : 0.0445
β3 : -1.89 (0.133) R2dE : 0.339 R2E : 0.245
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.178 (0.0776) R2dN8 : 0.0115 R2N8 : -0.0296
σ : 0.643
deviance : 190.59
__
_____
C
peak time of C : 15.2
E
wheather : temperature
threshold : 27.45
memory length : 2394
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.34 0.638 4.11 -0.462 0.645 -2.42 0.625 -1.12 -0.264 15.5 25.5 3650 -- --
185 0.633 4.14 -0.645 0.635 -2.27 0.608 -- -0.297 15.4 26.7 3588 -- --
185.46 0.634 4.11 -0.46 0.636 -2.4 -- -0.964 -0.26 15.5 25.9 3587 -- --
186.12 0.635 4.14 -0.641 0.639 -2.28 -- -- -0.296 15.4 26.6 3587 -- --
205.95 0.668 4.11 -0.447 -- -2.35 -- -0.939 -0.275 -- 25.6 3319 -- --
269.05 0.769 4.02 0.381 0.57 -- 0.728 -- 0.267 16.2 -- -- -- --
270.53 0.77 4.01 0.388 0.575 -- -- -- 0.271 16.3 -- -- -- --
206.72 0.67 4.14 -0.598 -- -2.22 -- -- -0.304 -- 26.3 3314 -- --
190.59 0.643 4.11 -- 0.698 -1.89 -- -- -0.178 15.2 27.45 2394 -- --
288.35 0.793 4.01 0.365 -- -- -- -- 0.256 -- -- -- -- --
274.5 0.775 4.02 -- 0.567 -- -- -- 0.228 16.3 -- -- -- --
214.26 0.682 4.11 -- -- -1.88 -- -- -0.166 -- 26.9 3266 -- --
291.87 0.797 4.02 -- -- -- -- -- 0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.12 radiation 1 43200 < th dose independent rect. 18 11
2 183.86 radiation 1 43200 < th dose independent rect. 18 3
7 183.89 radiation 1 43200 < th dose independent rect. 18 7
12 185.46 radiation 1 43200 > th dose independent rect. 18 11
13 186.04 radiation 40 43200 < th dose dependent rect. 18 11
15 186.12 temperature 25 4320 < th dose dependent rect. 21 2
17 186.20 radiation 1 43200 > th dose independent rect. 18 1
34 186.62 temperature 15 4320 > th dose dependent rect. 21 3
39 186.73 temperature 15 4320 > th dose dependent rect. 20 7
44 186.79 radiation 1 14400 < th dose dependent rect. 16 15
50 186.85 radiation 1 4320 < th dose dependent rect. 17 13
52 186.87 temperature 15 4320 > th dose dependent rect. 17 13
81 187.02 radiation 1 14400 < th dose dependent rect. 16 3
94 187.09 radiation 1 14400 < th dose dependent rect. 8 23
120 187.24 radiation 1 43200 > th dose dependent rect. 18 1
131 187.25 temperature 15 4320 > th dose dependent sin 12 NA
132 187.25 temperature 25 4320 < th dose dependent sin 13 NA
133 187.25 radiation 1 43200 < th dose dependent rect. 3 2
137 187.26 radiation 1 14400 < th dose dependent sin 13 NA
154 187.29 radiation 40 43200 < th dose dependent rect. 18 3
156 187.29 radiation 1 14400 < th dose dependent rect. 6 23
166 187.33 radiation 1 14400 < th dose dependent rect. 6 13
175 187.35 radiation 1 14400 < th dose dependent rect. 8 11
190 187.37 radiation 1 14400 < th dose dependent rect. 16 21
199 187.39 radiation 1 14400 < th dose dependent rect. 4 15
222 187.41 temperature 30 1440 < th dose dependent rect. 20 13
230 187.42 temperature 30 1440 < th dose dependent rect. 3 5
256 187.46 temperature 15 1440 > th dose dependent rect. 3 5
304 187.53 temperature 30 1440 < th dose dependent rect. 4 3
347 187.57 temperature 15 1440 > th dose dependent rect. 5 2
370 187.59 temperature 15 1440 > th dose dependent rect. 24 9
386 187.60 radiation 1 14400 < th dose dependent no NA NA
440 187.65 temperature 30 1440 < th dose dependent rect. 24 9
443 187.65 temperature 25 4320 < th dose dependent rect. 17 19
538 187.77 temperature 30 1440 < th dose dependent sin 9 NA
618 187.87 temperature 25 4320 < th dose dependent rect. 11 20
907 188.28 temperature 25 4320 < th dose dependent no NA NA
967 188.34 temperature 25 4320 < th dose dependent rect. 5 23
998 188.40 temperature 25 4320 < th dose dependent rect. 2 23