BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0159200 Os01g0159200|AK108308
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0159200  Conserved hypothetical protein                      265   3e-71

>Os01g0159200 Conserved hypothetical protein
          Length = 217

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/217 (69%), Positives = 150/217 (69%)

Query: 1   RQPAEQLAQRADGVRADGQRVHVAPLRHAQLAVRPAEELAGAVPRAVHADPHVAVRHRQQ 60
           RQPAEQLAQRADGVRADGQRVHVAPLRHAQLAVRPAEELAGAVPRAVHADPHVAVRHRQQ
Sbjct: 1   RQPAEQLAQRADGVRADGQRVHVAPLRHAQLAVRPAEELAGAVPRAVHADPHVAVRHRQQ 60

Query: 61  PAPDAGRQQLAGAVPAQRDGGGAAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPDGH 120
           PAPDAGRQQLAGAVPAQRDGGGAAGE                            AAPDGH
Sbjct: 61  PAPDAGRQQLAGAVPAQRDGGGAAGEHLHRRRQRHRRQRALHRRQPRRVPGGQGAAPDGH 120

Query: 121 LQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSRGGEGDGRCWCRGGSC 180
           LQ                                       PVSRGGEGDGRCWCRGGSC
Sbjct: 121 LQHAGARARAAVAGDEEEGEDAGHVGRRRARGRRRDAGRDDPVSRGGEGDGRCWCRGGSC 180

Query: 181 LGERLVGAVTMRLMTSLSEISVLYAPSIIFSVVFFLS 217
           LGERLVGAVTMRLMTSLSEISVLYAPSIIFSVVFFLS
Sbjct: 181 LGERLVGAVTMRLMTSLSEISVLYAPSIIFSVVFFLS 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,277,247
Number of extensions: 249196
Number of successful extensions: 1032
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)