FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0159200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.0862) R2 : 0.58
β1 : -7.77 (0.327) R2dD : 0.594 R2D : 0.477
β2 : 0.194 (0.221) R2dC : 0.000712 R2C : -0.00343
β3 : -2.01 (0.269) R2dE : 0.067 R2E : 0.04
β4 : -3.73 (1) R2dD*C : 0.0129 R2D*C : 0.00721
β5 : 7.08 (0.977) R2dD*E : 0.0629 R2D*E : -0.11
γ1 : -1.09 (0.196) R2dN8 : 0.0444 R2N8 : -0.054
σ : 1.61
deviance : 1167.77
__
_____
C
peak time of C : 16.9
E
wheather : radiation
threshold : 9.999
memory length : 1446
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 0.987

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1167.77 1.61 5.41 -7.77 0.194 -2.01 -3.73 7.08 -1.09 16.9 9.999 1446 15 0.987
1272.64 1.66 5.41 -7.36 0.179 -1.78 -3.8 -- -1.02 17.1 9.553 1220 15 1.22
1201.25 1.61 5.41 -7.73 0.254 -2.08 -- 6.8 -1.08 15.2 10 1448 15 0.989
1301.4 1.68 5.41 -7.18 0.113 -1.78 -- -- -1.02 15.7 9.56 1220 15 1.22
1204.47 1.62 5.41 -7.73 -- -2.09 -- 7.03 -1.09 -- 9.99 1448 15 0.983
1370.81 1.74 5.34 -7.19 0.177 -- -3.63 -- -0.481 17.2 -- -- -- --
1401.36 1.75 5.34 -7.19 0.255 -- -- -- -0.497 13.5 -- -- -- --
1302.16 1.68 5.41 -7.18 -- -1.78 -- -- -1.02 -- 9.56 1220 15 1.22
2352.05 2.26 5.4 -- 0.313 -2.14 -- -- -0.853 15.1 9.427 4087 15.6 0.948
1405.34 1.75 5.35 -7.2 -- -- -- -- -0.502 -- -- -- -- --
2762.98 2.46 5.16 -- 0.387 -- -- -- 0.304 14.1 -- -- -- --
1759.56 1.95 4.89 -- -- -8.39 -- -- 0.666 -- 9.99 4328 17 1.52
2771.94 2.46 5.17 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1155.54 atmosphere 995.0 43200 < th dose independent rect. 18 15
2 1156.20 atmosphere 995.0 43200 < th dose dependent sin 12 NA
3 1156.94 atmosphere 995.0 43200 < th dose independent sin 10 NA
4 1157.34 atmosphere 995.0 43200 > th dose independent sin 9 NA
5 1157.45 atmosphere 995.0 43200 > th dose independent rect. 18 15
10 1161.29 wind 1.0 14400 < th dose dependent rect. 1 3
13 1164.01 atmosphere 995.0 43200 > th dose independent rect. 20 13
16 1164.17 atmosphere 995.0 43200 < th dose independent rect. 21 12
26 1171.91 atmosphere 995.0 43200 < th dose dependent rect. 13 17
30 1172.09 radiation 10.0 1440 < th dose independent rect. 15 1
31 1172.73 atmosphere 995.0 43200 < th dose independent rect. 2 6
32 1172.88 atmosphere 995.0 43200 < th dose dependent rect. 2 6
34 1173.04 atmosphere 995.0 43200 > th dose independent rect. 2 6
37 1174.56 atmosphere 995.0 43200 < th dose dependent rect. 17 15
64 1178.62 atmosphere 995.0 43200 < th dose dependent rect. 21 11
74 1181.16 atmosphere 995.0 43200 < th dose dependent rect. 18 6
75 1181.27 atmosphere 995.0 43200 > th dose independent rect. 20 2
81 1182.82 atmosphere 995.0 43200 < th dose independent rect. 21 1
93 1182.82 atmosphere 995.0 43200 < th dose dependent rect. 21 1
107 1183.02 atmosphere 995.0 43200 > th dose independent rect. 23 1
122 1188.05 wind 1.0 14400 < th dose independent rect. 24 4
147 1193.27 radiation 40.0 43200 > th dose independent rect. 7 1
163 1193.27 radiation 40.0 43200 > th dose dependent rect. 7 1
267 1201.13 radiation 10.0 1440 < th dose dependent rect. 11 6
271 1201.31 wind 1.0 14400 < th dose independent rect. 1 1
290 1202.38 radiation 10.0 1440 < th dose dependent rect. 11 17
292 1202.42 radiation 10.0 1440 < th dose dependent rect. 11 14
303 1202.65 radiation 10.0 1440 < th dose dependent rect. 11 8
305 1202.70 radiation 10.0 1440 < th dose dependent rect. 11 11
316 1203.68 wind 1.0 14400 > th dose independent rect. 1 3
358 1207.81 atmosphere 995.0 43200 > th dose independent rect. 5 1
372 1208.93 atmosphere 995.0 43200 < th dose independent rect. 1 1
399 1208.93 humidity 90.0 14400 > th dose dependent rect. 12 1
400 1208.93 atmosphere 995.0 43200 < th dose dependent rect. 1 1
429 1209.02 atmosphere 995.0 43200 > th dose independent rect. 1 1
489 1215.81 radiation 10.0 1440 < th dose dependent sin 18 NA
490 1215.92 wind 1.0 4320 < th dose independent rect. 6 1
494 1216.48 wind 3.0 14400 < th dose dependent rect. 6 1
497 1216.92 wind 1.0 14400 < th dose dependent rect. 1 8
498 1217.19 wind 3.0 14400 > th dose independent rect. 8 1
500 1217.37 wind 1.0 4320 > th dose independent rect. 6 1
503 1218.60 temperature 20.0 14400 > th dose independent rect. 16 1
512 1219.65 wind 5.0 14400 < th dose dependent rect. 8 1
515 1220.30 wind 3.0 14400 > th dose independent rect. 6 4
527 1220.96 wind 1.0 14400 > th dose independent rect. 1 1
529 1221.01 temperature 20.0 14400 < th dose independent rect. 16 2
534 1221.66 radiation 10.0 1440 > th dose independent rect. 11 1
544 1222.28 radiation 10.0 1440 < th dose dependent rect. 11 2
556 1223.15 wind 3.0 14400 < th dose independent rect. 6 4
558 1223.28 wind 3.0 14400 < th dose dependent rect. 6 3
568 1224.96 wind 3.0 14400 < th dose independent rect. 8 1
585 1226.50 humidity 90.0 14400 > th dose independent rect. 12 1
588 1226.57 wind 1.0 14400 < th dose dependent rect. 1 15
612 1228.58 wind 7.0 4320 < th dose dependent rect. 5 4
620 1229.23 wind 3.0 4320 > th dose dependent rect. 8 1
627 1229.77 wind 3.0 43200 < th dose dependent rect. 22 1
628 1229.81 wind 7.0 14400 > th dose independent rect. 23 1
630 1229.90 wind 1.0 14400 < th dose independent rect. 1 8
651 1230.97 wind 1.0 14400 > th dose independent rect. 14 1
653 1231.09 wind 1.0 4320 > th dose dependent rect. 5 4
667 1232.19 precipitation 0.1 14400 < th dose independent rect. 11 2
668 1232.19 precipitation 0.1 14400 < th dose dependent rect. 11 2
685 1233.13 wind 7.0 14400 < th dose independent rect. 23 1
692 1233.54 wind 1.0 14400 < th dose dependent sin 7 NA
694 1233.71 wind 1.0 4320 < th dose independent rect. 3 4
700 1234.24 wind 1.0 14400 < th dose independent rect. 14 1
701 1234.25 precipitation 0.1 14400 > th dose independent rect. 12 1
702 1234.25 precipitation 0.1 14400 > th dose dependent rect. 12 1
715 1234.97 wind 1.0 14400 < th dose dependent rect. 14 1
748 1236.82 wind 1.0 14400 > th dose independent rect. 1 8
754 1237.01 radiation 30.0 4320 > th dose independent rect. 15 17
779 1237.95 wind 1.0 14400 < th dose dependent rect. 13 20
788 1238.41 wind 9.0 14400 > th dose dependent rect. 23 2
792 1238.48 humidity 70.0 43200 < th dose independent rect. 1 6
798 1238.74 humidity 90.0 14400 < th dose independent rect. 12 1
843 1240.47 humidity 70.0 43200 > th dose independent rect. 1 6
845 1240.48 precipitation 0.1 14400 > th dose dependent rect. 14 1
860 1240.72 precipitation 0.1 14400 > th dose independent rect. 1 1
861 1240.72 precipitation 0.1 14400 > th dose dependent rect. 1 1
873 1240.89 wind 3.0 14400 < th dose independent rect. 22 2
876 1240.91 precipitation 0.1 14400 < th dose independent rect. 1 1
877 1240.91 precipitation 0.1 14400 < th dose dependent rect. 1 1
897 1241.62 wind 1.0 14400 < th dose dependent rect. 3 6
911 1242.06 wind 3.0 14400 > th dose independent rect. 22 13
914 1242.13 wind 3.0 14400 > th dose independent rect. 22 2
932 1242.65 wind 1.0 4320 < th dose dependent rect. 3 4
952 1243.27 temperature 20.0 14400 < th dose dependent rect. 17 3
958 1243.38 radiation 10.0 1440 > th dose independent rect. 11 7
970 1243.40 radiation 10.0 1440 < th dose independent rect. 15 13
972 1243.43 radiation 10.0 1440 < th dose independent rect. 15 10
994 1243.76 radiation 10.0 1440 < th dose independent rect. 15 7