BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0158900 Os01g0158900|AK066765
(909 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0158900 Zinc finger, RING-type domain containing protein 1609 0.0
AK110458 238 1e-62
Os06g0252300 Zinc finger, PHD-type domain containing protein 232 8e-61
AK110133 179 8e-45
AK110240 166 6e-41
>Os01g0158900 Zinc finger, RING-type domain containing protein
Length = 909
Score = 1609 bits (4167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/848 (95%), Positives = 810/848 (95%)
Query: 62 GEETDLTASDPAAASVISSYLSVAGDGADLSKVGIFLSSAARRRSPPCLICFDPIRPSDP 121
GEETDLTASDPAAASVISSYLSVAGDGADLSKVGIFLSSAARRRSPPCLICFDPIRPSDP
Sbjct: 62 GEETDLTASDPAAASVISSYLSVAGDGADLSKVGIFLSSAARRRSPPCLICFDPIRPSDP 121
Query: 122 VWSCSASCFALLHLHCIQSWAHQSSSAAPSPTWGCPKCRFPYPKSQTPTSYLCFCSKTVD 181
VWSCSASCFALLHLHCIQSWAHQSSSAAPSPTWGCPKCRFPYPKSQTPTSYLCFCSKTVD
Sbjct: 122 VWSCSASCFALLHLHCIQSWAHQSSSAAPSPTWGCPKCRFPYPKSQTPTSYLCFCSKTVD 181
Query: 182 PAPDPWILPHSCGDVCGRRLNADRDSGCEHNXXXXXXXXXXXXXXAIVPNAMCFCGSHRE 241
PAPDPWILPHSCGDVCGRRLNADRDSGCEHN AIVPNAMCFCGSHRE
Sbjct: 182 PAPDPWILPHSCGDVCGRRLNADRDSGCEHNCLLLCHPGPCPPCPAIVPNAMCFCGSHRE 241
Query: 242 TRRCSHQRYSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSER 301
TRRCSHQRYSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSER
Sbjct: 242 TRRCSHQRYSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSER 301
Query: 302 VFQCKRECGGMLQCGKHSCERGCHAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGS 361
VFQCKRECGGMLQCGKHSCERGCHAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGS
Sbjct: 302 VFQCKRECGGMLQCGKHSCERGCHAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGS 361
Query: 362 TCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLKKEVPCYQELTCERKCQRLRN 421
TCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLKKEVPCYQELTCERKCQRLRN
Sbjct: 362 TCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLKKEVPCYQELTCERKCQRLRN 421
Query: 422 CGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRGACAPCPLMKTISCNCGQTFF 481
CGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRGACAPCPLMKTISCNCGQTFF
Sbjct: 422 CGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRGACAPCPLMKTISCNCGQTFF 481
Query: 482 EVPCGTEKNQKPPKCSKKCNIARLCRHKLECRPHKCHYGACPPCKLICGEELSCGHRCKL 541
EVPCGTEKNQKPPKCSKKCNIARLCRHKLECRPHKCHYGACPPCKLICGEELSCGHRCKL
Sbjct: 482 EVPCGTEKNQKPPKCSKKCNIARLCRHKLECRPHKCHYGACPPCKLICGEELSCGHRCKL 541
Query: 542 RCHGPIAPPNPEFTLKPIKRKKGKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSK 601
RCHGPIAPPNPEFTLKPIKRKKGKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSK
Sbjct: 542 RCHGPIAPPNPEFTLKPIKRKKGKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSK 601
Query: 602 RRQFPCQNLCGNPLNCGNHYCTKACHVLQIPLSQPEGDQXXXXXXXXXXXFAEPCEECNL 661
RRQFPCQNLCGNPLNCGNHYCTKACHVLQIPLSQPEGDQ FAEPCEECNL
Sbjct: 602 RRQFPCQNLCGNPLNCGNHYCTKACHVLQIPLSQPEGDQSAILSLASASAFAEPCEECNL 661
Query: 662 PCQRVREXXXXXXXXXXXXXNDCPPCKALVKRPCHCGAMVHAFECMYYNNLNATKQQKVR 721
PCQRVRE NDCPPCKALVKRPCHCGAMVHAFECMYYNNLNATKQQKVR
Sbjct: 662 PCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGAMVHAFECMYYNNLNATKQQKVR 721
Query: 722 SCGGPCHRKLPNCPHLCSEICHPGQCPSVDQCMKKVNVRCACNNLKKEWICQDVLKEYRQ 781
SCGGPCHRKLPNCPHLCSEICHPGQCPSVDQCMKKVNVRCACNNLKKEWICQDVLKEYRQ
Sbjct: 722 SCGGPCHRKLPNCPHLCSEICHPGQCPSVDQCMKKVNVRCACNNLKKEWICQDVLKEYRQ 781
Query: 782 SGRDPKQIPKNQYAVGLLACGEDCVKKVKAADSELHLRKIQEIKTPAVEVENVPKRRKRR 841
SGRDPKQIPKNQYAVGLLACGEDCVKKVKAADSELHLRKIQEIKTPAVEVENVPKRRKRR
Sbjct: 782 SGRDPKQIPKNQYAVGLLACGEDCVKKVKAADSELHLRKIQEIKTPAVEVENVPKRRKRR 841
Query: 842 NRGQESVESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRLSDWMNDMEEQRARQ 901
NRGQESVESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRLSDWMNDMEEQRARQ
Sbjct: 842 NRGQESVESSKFQEIKAVALKFLLVIFLCIIVVAGLYLLWKGVYRLSDWMNDMEEQRARQ 901
Query: 902 RHLKPGRL 909
RHLKPGRL
Sbjct: 902 RHLKPGRL 909
>AK110458
Length = 902
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 172/496 (34%), Positives = 228/496 (45%), Gaps = 62/496 (12%)
Query: 96 IFLSSAARRRSPPCLICFDPIRPSDPVWSCSASCFALLHLHCIQSWAHQSSSAAPSPTWG 155
+ +S ++ + C+IC + IR W C C+ + HL C++ W+ S + ++
Sbjct: 25 VAMSEQLKKGTYECMICTEGIRSQVATWHCR-ECYQVFHLFCLKKWSKSEGSGVGN-SFR 82
Query: 156 CPKCRFPYPKSQTPTSYLCFCSKTVDPAPDPWILPHSCGDVCGRRLNADRDSGCEHNXXX 215
CP C+ Y P Y CFC K VDP PD +I PH+CGDVC RR R GC H
Sbjct: 83 CPSCQTHY--DNAPNKYYCFCGKRVDPQPDAFITPHTCGDVCSRR----RPHGCPHPCAA 136
Query: 216 XXXXXXXXXXXAIVPNAMCFCGSHRETRRCS--HQRYSCSGKCNKRLGCGIHRCPVDCHD 273
C CG + +C +++C+ C K L CG H C CH
Sbjct: 137 LCHPGPCVDCTQETEPKPCPCGKSTYSHQCGKPDPKFTCAEVCGKTLNCGTHTCGRPCHY 196
Query: 274 GPCPPCAVRGKHKCECGETMEERLCSERVFQCKRECGGMLQCGKHSCERGCHAGKCGGCP 333
GPC C V C+CG++ + +C + C+ CG + +CG H C CHAG C C
Sbjct: 197 GPCGTCEVTLATACKCGKSTRQLVCGSPAYSCEECCGKLQRCGVHKCNVVCHAGSCPPCD 256
Query: 334 LQGR--RTCPCGKKDYPS---LDCDAEAATCGSTCEKVLGCGRHKCPERCHRGSCVETCR 388
TCPCGK P C TCG C +VLGCGRH C CH G C C
Sbjct: 257 ADPAVVFTCPCGKTMLPEGCRTACTDPIPTCGQVCARVLGCGRHYCTRLCHEGEC-GACD 315
Query: 389 LVITKSCRCGGLKKEVPCYQ--ELTCERKCQRLRNCGRHACRRRCCEGDCAP------CP 440
I C CG ++++ C + + C+RKC+ CGRH C CC + C
Sbjct: 316 ARINAQCPCGATQRKLACAEADDFRCDRKCKARLACGRHECSTICCPHRRSANPADHICT 375
Query: 441 EVCDKRLRCGNHKCLSPCHRGACAPCPLMKT--ISCNCGQTFFE--VPCGTEKNQKPPKC 496
C K+L CG H+C PCHRG C PC + T +SC CG E PCGT PP+C
Sbjct: 376 RPCGKQLACG-HRCPDPCHRGNCQPCINIVTTELSCACGSVVLEPPQPCGT----APPEC 430
Query: 497 SKKCNIARLCRHKLECRPHKCHYGACPPC------------KLI---------------C 529
S+ C I C H H CH+G CP C +I C
Sbjct: 431 SRPCQIPLPCGHASV--EHSCHFGDCPKCFEKVDRACLGGHTIIKNVLCSGGVLSCGAPC 488
Query: 530 GEELSCGHRCKLRCHG 545
G++L+CGH+C +CHG
Sbjct: 489 GKDLACGHKCLRKCHG 504
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 127/479 (26%), Positives = 160/479 (33%), Gaps = 106/479 (22%)
Query: 318 HSCERGCHAGKCGGCPLQGR-RTCPCGKKDYPSLDCDAE--AATCGSTCEKVLGCGRHKC 374
H C CH G C C + + CPCGK Y S C TC C K L CG H C
Sbjct: 132 HPCAALCHPGPCVDCTQETEPKPCPCGKSTY-SHQCGKPDPKFTCAEVCGKTLNCGTHTC 190
Query: 375 PERCHRGSCVETCRLVITKSCRCGGLKKEVPCYQ-ELTCERKCQRLRNCGRHACRRRCCE 433
CH G C TC + + +C+CG +++ C +CE C +L+ CG H C C
Sbjct: 191 GRPCHYGPC-GTCEVTLATACKCGKSTRQLVCGSPAYSCEECCGKLQRCGVHKCNVVCHA 249
Query: 434 GDCAPCP--------------------------------EVCDKRLRCGNHKCLSPCHRG 461
G C PC +VC + L CG H C CH G
Sbjct: 250 GSCPPCDADPAVVFTCPCGKTMLPEGCRTACTDPIPTCGQVCARVLGCGRHYCTRLCHEG 309
Query: 462 ACAPCPLMKTISCNCGQTFFEVPCGTEKNQKPPKCSKKCNIARLCRHKLECRPHKCHYGA 521
C C C CG T ++ C + + C +KC + +L C H+C
Sbjct: 310 ECGACDARINAQCPCGATQRKLACAEADDFR---CDRKC------KARLACGRHECSTIC 360
Query: 522 CP----------PCKLICGEELSCGHRCKLRCH-------------------GPIA--PP 550
CP C CG++L+CGHRC CH G + PP
Sbjct: 361 CPHRRSANPADHICTRPCGKQLACGHRCPDPCHRGNCQPCINIVTTELSCACGSVVLEPP 420
Query: 551 NPEFTLKP---------IKRKKGKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSK 601
P T P + S CP C E V C G H + +LCS
Sbjct: 421 QPCGTAPPECSRPCQIPLPCGHASVEHSCHFGDCPKCFEKVDRACLGGHT-IIKNVLCSG 479
Query: 602 RRQFPCQNLCGNPLNCGNHYCTKACHVLQIPLSQPEGDQXXXXXXXXXXXFAEPCEECNL 661
C CG L CG H C + CH GD +C
Sbjct: 480 G-VLSCGAPCGKDLACG-HKCLRKCH----------GDDCVELDRGGRP------RKCEQ 521
Query: 662 PCQRVREXXXXXXXXXXXXXNDCPPCKALVKRPCHCGAMVHAFECMYYNNLNATKQQKV 720
PC +C PC C CG C + L A V
Sbjct: 522 PCGAPLPCGHTCRGKCHPEKAECAPCSTNTPVLCECGETQTNLSCTAFAELKANTPPGV 580
>Os06g0252300 Zinc finger, PHD-type domain containing protein
Length = 1016
Score = 232 bits (592), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 177/503 (35%), Positives = 235/503 (46%), Gaps = 60/503 (11%)
Query: 85 AGDGADLSKVGIFLSSAARRRSPPCLICFDPIRPSDPVWSCSASCFALLHLHCIQSWAHQ 144
GDGA + ++ + R + C+IC+D +R S PVWSC SCF++ HL CI+ WA
Sbjct: 48 GGDGA-VPQLVQEIQDKLARGAVECMICYDMVRRSAPVWSC-GSCFSIFHLPCIRKWARS 105
Query: 145 SSSAA----PSPTWGCPKCRFPYPKSQTPTSYLCFCSKTVDPAPDPWILPHSCGDVCGRR 200
+SAA P +W CP C+ + +Y CFC + +P D ++ PHSCG+ C +
Sbjct: 106 PASAADASDPDSSWRCPGCQSVHAVPARELAYTCFCGRRREPPNDLFLTPHSCGEPCSKP 165
Query: 201 LN-------ADRDSG--CEHNXXXXXXXXXXXXXXAIVPNAMCFCGSHRETRRCSHQR-- 249
L AD + C H A P+ +C CG RRC+ +
Sbjct: 166 LEKADPAVKADDAAATRCPHVCVLQCHPGPCPPCKAFAPDRLCPCGKQTIVRRCADRTTP 225
Query: 250 YSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSER-------- 301
+C +C++ L C HRC CH GPC C V +C CG+ E LC E
Sbjct: 226 VTCGQRCDRLLPCRRHRCEKVCHTGPCGDCNVLISARCFCGKKTETLLCGEMELKGNLSE 285
Query: 302 ---VFQCKRECGGMLQCGKHSCERGCHAGKCGGCPLQ-GRRT-CPCGKKDY--PSLDCDA 354
VF C C ML CG H+C+ CH G CG C L G+ T C CGK C
Sbjct: 286 KDGVFSCSEACSHMLSCGNHACQDICHPGPCGECELMPGKVTACHCGKTRLLEKRASCLD 345
Query: 355 EAATCGSTCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLKKEVPCY----QEL 410
TC C+K L CG H+C CH G C C + + + CRCG + V CY +E
Sbjct: 346 PIPTCDKVCDKKLPCGVHRCKVTCHEGDC-PPCVVRVEQRCRCGSSGQMVECYKVLEEEF 404
Query: 411 TCERKCQRLRNCGRHACRRRCCE----------GDCAP--CPEVCDKRLRCGNHKCLSPC 458
C + C R +NCGRH C CC G+ P C C K+LRCG H C C
Sbjct: 405 RCNKPCGRKKNCGRHRCSECCCPLSKPLARLEGGNWDPHLCQIPCGKKLRCGQHGCQLLC 464
Query: 459 HRGACAPC--PLMKTISCNCGQTFF--EVPCGTEKNQKPPKCSKKCNIARLCRHKLECRP 514
H G C PC + ++C CG+T +PCGT P C +C + + C H
Sbjct: 465 HSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPT----PSCPHQCLVPQPCGHPAT--- 517
Query: 515 HKCHYGACPPCKLICGEELSCGH 537
H+CH+G CPPC + E GH
Sbjct: 518 HQCHFGDCPPCVVPVMRECIGGH 540
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 135/307 (43%), Gaps = 59/307 (19%)
Query: 234 CFCGSHRETRR---CSHQRYSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECG 290
C CG R + C +C C+K+L CG+HRC V CH+G CPPC VR + +C CG
Sbjct: 329 CHCGKTRLLEKRASCLDPIPTCDKVCDKKLPCGVHRCKVTCHEGDCPPCVVRVEQRCRCG 388
Query: 291 ETMEERLCS---ERVFQCKRECG------------------------------------- 310
+ + C E F+C + CG
Sbjct: 389 SSGQMVECYKVLEEEFRCNKPCGRKKNCGRHRCSECCCPLSKPLARLEGGNWDPHLCQIP 448
Query: 311 --GMLQCGKHSCERGCHAGKCGGC--PLQGRRTCPCGKKDYPS-LDCDAEAATCGSTCEK 365
L+CG+H C+ CH+G C C + TC CG+ P L C +C C
Sbjct: 449 CGKKLRCGQHGCQLLCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPTPSCPHQCLV 508
Query: 366 VLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLK-KEVPC-YQELTCERKCQRLRNCG 423
CG H +CH G C C + + + C G + + +PC +++ C + C + R CG
Sbjct: 509 PQPCG-HPATHQCHFGDC-PPCVVPVMRECIGGHVVLRNIPCGSKDIRCNQPCGKNRQCG 566
Query: 424 RHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRGACAPCPLMK-----TISCNCGQ 478
HAC R C C PC +VC R H C +PCH +PCP ++ TI+C+CG+
Sbjct: 567 MHACNRSCHPSPCDPCGQVCGAPRRECKHTCTAPCHPS--SPCPDLRCEFPMTIACSCGR 624
Query: 479 TFFEVPC 485
VPC
Sbjct: 625 ITATVPC 631
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 163/448 (36%), Gaps = 71/448 (15%)
Query: 318 HSCERGCHAGKCGGC-PLQGRRTCPCGKKDYPSLDCD-AEAATCGSTCEKVLGCGRHKCP 375
H C CH G C C R CPCGK+ D TCG C+++L C RH+C
Sbjct: 185 HVCVLQCHPGPCPPCKAFAPDRLCPCGKQTIVRRCADRTTPVTCGQRCDRLLPCRRHRCE 244
Query: 376 ERCHRGSCVETCRLVITKSCRCGGLKKEVPCYQELTCERKCQRLRNCGRHACRRRCCEGD 435
+ CH G C + C ++I+ C CG +K + L CG + E D
Sbjct: 245 KVCHTGPCGD-CNVLISARCFCG---------------KKTETLL-CGEMELKGNLSEKD 287
Query: 436 -CAPCPEVCDKRLRCGNHKCLSPCHRGACAPCPLM--KTISCNCGQTFFEVPCGTEKNQK 492
C E C L CGNH C CH G C C LM K +C+CG+T EK
Sbjct: 288 GVFSCSEACSHMLSCGNHACQDICHPGPCGECELMPGKVTACHCGKTRL-----LEKRAS 342
Query: 493 PPKCSKKCNIARLCRHKLECRPHKC----HYGACPPCKLICGEELSCGHRCKL-RCHGPI 547
C+ ++C KL C H+C H G CPPC + + CG ++ C+ +
Sbjct: 343 CLDPIPTCD--KVCDKKLPCGVHRCKVTCHEGDCPPCVVRVEQRCRCGSSGQMVECYKVL 400
Query: 548 APPNPEFT-LKPIKRKK--GKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSKRRQ 604
EF KP RKK G+H C C + P G LC Q
Sbjct: 401 ---EEEFRCNKPCGRKKNCGRHR-------CSECCCPLSKPLARLEGGNWDPHLC----Q 446
Query: 605 FPCQNLCGNPLNCGNHYCTKACHVLQIP--LSQPEGDQX---XXXXXXXXXXFAEPCEEC 659
PC G L CG H C CH P L D P C
Sbjct: 447 IPC----GKKLRCGQHGCQLLCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPTPSC 502
Query: 660 NLPCQRVREXXXXXXXXXXXXXNDCPPCKALVKRPCHCGAMVHAFECMYYNNLNATKQQK 719
P Q + DCPPC V R C G +V N K
Sbjct: 503 --PHQCLVPQPCGHPATHQCHFGDCPPCVVPVMRECIGGHVVLR---------NIPCGSK 551
Query: 720 VRSCGGPCHRKLPNCPHLCSEICHPGQC 747
C PC + H C+ CHP C
Sbjct: 552 DIRCNQPCGKNRQCGMHACNRSCHPSPC 579
>AK110133
Length = 1182
Score = 179 bits (454), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 165/513 (32%), Positives = 208/513 (40%), Gaps = 119/513 (23%)
Query: 109 CLICFDPIRPSDPVWSCSASCFALLHLHCIQSWAHQSSSAAPS--------------PTW 154
C+IC+ + WSCS C+++LHL C++ WA S A TW
Sbjct: 202 CVICYSTVTTRQATWSCS-QCYSVLHLPCVRKWADSSVKKAEEHNAMQEDPEIRNRRGTW 260
Query: 155 GCPKCRFPYPKSQTPTSYLCFCSKTVDPAPDPWILPHSCGDVCGRRLNADRDSGCEHNXX 214
CP C+ Y + P Y C+C +T DP PH CG C R C H
Sbjct: 261 RCPGCQ--YAREDVPKIYWCWCGRTQDPPGGRGANPHGCGQRCSR-------GKCAHGCA 311
Query: 215 XXXXXXXXXXXXAIVPNAMCFCGSHRETRRCS------------HQR-YSCSGKCNKRLG 261
A+ + CFCG+ RCS HQR SC G C K+L
Sbjct: 312 DSCHPGPCPPC-AVTVSQKCFCGAQTIPMRCSQTAAKEARLSALHQRGTSCGGVCGKKLD 370
Query: 262 CGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSERV----------------FQC 305
CG H C CH G C PC ++ +C CG+ C + V F C
Sbjct: 371 CGSHTCEDVCHPGECQPCGIQVDARCYCGKRTRTMRCGDGVPQDSFDDESAIGFQGRFNC 430
Query: 306 KRECGGMLQCGKHSCERGCHAGK-----CGGCPLQGRRTCPCGKKDYPS-LDCDAEAATC 359
EC CG H C + CHA C P +TCPCG S C TC
Sbjct: 431 DDECRRPFDCGVHYCSKPCHARDPQRPVCPSSP-SLVKTCPCGAIPVTSRTSCQDPIPTC 489
Query: 360 GSTCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRCGGLKKEVPCY----------QE 409
G+TC KV CG H CP CH G C CR+ ++ CRCG K+ C+ QE
Sbjct: 490 GNTCSKVSICG-HPCPAVCHLGPC-PPCRVPVSTPCRCGETKQSRTCHERQQEELEGRQE 547
Query: 410 LTCERKCQRLRNCGRHACRRRCC-----------------------EGDCAPCPEVCDKR 446
+ C CQ LR+CG+H C R+CC C C K
Sbjct: 548 VLCSTVCQSLRHCGKHQCNRQCCPLYFQAKSKSKKRPTLAELQALDPAGLHECSIPCSKP 607
Query: 447 LRCGNHKCLSPCHRGACAPC--PLMKTISCNCGQTFFE--VPCGTEKN------QKPPKC 496
L CG+H+C CHRGAC PC + + C+CG+T E VPCGT+ + PP C
Sbjct: 608 LPCGSHECPMTCHRGACPPCLQASFEELICHCGRTVLEPPVPCGTQVRCNFPCVRPPPSC 667
Query: 497 SKKCNIARLCRHKLECRPHKCHYGA-CPPCKLI 528
K+ PH CH CPPC +
Sbjct: 668 GHP---------KM---PHDCHEDEPCPPCVYL 688
>AK110240
Length = 1093
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 160/533 (30%), Positives = 210/533 (39%), Gaps = 90/533 (16%)
Query: 78 ISSYLSVAGDGADLSKVGIFLSSAARRRSPPCLICFDPIRPSDPVWSCSASCFALLHLHC 137
+S V + + +G + + C IC D + + VWSC+ C+ ++HL C
Sbjct: 147 VSQEPHVKQPKSTAADLGTRIHDDISNWNYECAICTDDVLRTSHVWSCTV-CWTVVHLKC 205
Query: 138 IQSWAH--------QSSSAAPSPTWGCPKCRFPYPKSQTPTSYLCFCSKTVDPAPDPWIL 189
+ W QSS W CP C P SY C+C K ++P P L
Sbjct: 206 AKRWYGNQKKQDDLQSSEPQREFLWRCPGCNSKL--VDDPGSYHCWCGKEINPPPTSAAL 263
Query: 190 -PHSCGDVCGRRLNADRDSGCEHNXXXXXXXXXXXXXXAIVPNAMCFCGSHRETRRCSHQ 248
PHSCG C + + C H + PN CFCG + + C
Sbjct: 264 PPHSCGQTCSKPR-----ATCPHPCSLQCHAGPCPPCGLVGPNQSCFCGKNASQKLCRET 318
Query: 249 RY----SCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSER--- 301
Y SC C L CG H C CH G C C V+ + +C CG + C ER
Sbjct: 319 DYENGWSCQETCEDLLPCGEHLCSRPCHSGLCGECDVKVEARCYCGRVDKVIPCYERDEL 378
Query: 302 --------------VFQCKRECGGMLQCGKHSCERGCHAGK--CGGCPLQGRRT--CPCG 343
F+C + C CG H+C CH + CP CPCG
Sbjct: 379 QQSYDTTKGTWFEGSFKCDQLCKRPFDCGIHTCNETCHTQEELPSHCPYSPDTVTHCPCG 438
Query: 344 KK------DYPSLDCDAEAATCGSTCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCRC 397
K D P C+ + C CEK+L CG H C +CH G C C I SCRC
Sbjct: 439 KTPLEELLDSPRQSCEDDVPPCDRPCEKLLPCG-HLCKAKCHVGDC-GFCDETIDISCRC 496
Query: 398 GGLKKEVPCY----QELTCERKCQRLRNCGRHACRRRCCEGDCAP--------------- 438
G + C+ Q C R CQ +CGRH C CC G+
Sbjct: 497 GRTTTKSMCHQGDLQHPLCMRTCQANLSCGRHKCGEHCCAGERKATERQAARRKNRAAAD 556
Query: 439 ---------CPEVCDKRLRCGNHKCLSPCHRGACAPCP--LMKTISCNCGQTFFE--VPC 485
C + C + L+CG+H C CHRG C CP + ISCNCG+T + PC
Sbjct: 557 VNSIEPEHICIKTCGRPLKCGSHDCQQICHRGPCGSCPEAVFHEISCNCGRTVLQPPQPC 616
Query: 486 GTEKNQKPPKCSKKCNIARLCRHKLECRPHKCHYG--ACPPCKLICGEELSCG 536
GT +PP+C C C H H CH +CP C + + +CG
Sbjct: 617 GT----RPPECRFNCQRRPGCGHPA--VDHHCHPDDISCPKCPFLVDKWCACG 663
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 137/538 (25%), Positives = 186/538 (34%), Gaps = 94/538 (17%)
Query: 283 GKHKCECGETMEERLCSERV--FQCKRECGGMLQCGKHSCERGCHAGKCGGCPLQG-RRT 339
G + C CG+ + S + C + C H C CHAG C C L G ++
Sbjct: 244 GSYHCWCGKEINPPPTSAALPPHSCGQTCSKPRATCPHPCSLQCHAGPCPPCGLVGPNQS 303
Query: 340 CPCGKKDYPSL--DCDAEAA-TCGSTCEKVLGCGRHKCPERCHRGSCVETCRLVITKSCR 396
C CGK L + D E +C TCE +L CG H C CH G C E C + + C
Sbjct: 304 CFCGKNASQKLCRETDYENGWSCQETCEDLLPCGEHLCSRPCHSGLCGE-CDVKVEARCY 362
Query: 397 CGGLKKEVPCYQELTCERKCQRLRNCGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLS 456
CG + K +PCY+ ++ + + C ++C + CG H C
Sbjct: 363 CGRVDKVIPCYERDELQQSYDTTKGTWFEGSFK---------CDQLCKRPFDCGIHTCNE 413
Query: 457 PCHRGACAP--CPLM--KTISCNCGQTFFEVPCGTEKN---QKPPKCSKKCNIARLCRHK 509
CH P CP C CG+T E + + P C + C C H
Sbjct: 414 TCHTQEELPSHCPYSPDTVTHCPCGKTPLEELLDSPRQSCEDDVPPCDRPCEKLLPCGHL 473
Query: 510 LECRPHKCHYGACPPCKLICGEELSCGHRC-KLRCHG-----PIAPPNPEFTLKPIKRKK 563
+ KCH G C C CG K CH P+ + L + K
Sbjct: 474 CKA---KCHVGDCGFCDETIDISCRCGRTTTKSMCHQGDLQHPLCMRTCQANLSCGRHKC 530
Query: 564 GKHIDSTPGTPCPPCQEVVLVPCFGHHLGQERAILCSKRRQFPCQNLCGNPLNCGNHYCT 623
G+H C + + A + S + C CG PL CG+H C
Sbjct: 531 GEH--------CCAGERKATERQAARRKNRAAADVNSIEPEHICIKTCGRPLKCGSHDCQ 582
Query: 624 KACH----------------------VLQIPLSQPEGDQXXXXXXXXXXXFAEPCEECNL 661
+ CH VLQ P QP G + EC
Sbjct: 583 QICHRGPCGSCPEAVFHEISCNCGRTVLQPP--QPCGTRPP---------------ECRF 625
Query: 662 PCQRVREXXXXXXXXXXXXXND--CPPCKALVKRPCHCG-AMVHAFECMYYNNLNATKQQ 718
CQR R +D CP C LV + C CG +H+ C
Sbjct: 626 NCQR-RPGCGHPAVDHHCHPDDISCPKCPFLVDKWCACGKEKLHSQPCHL---------- 674
Query: 719 KVRSCGGPCHRKLPNCPHLCSEICH-PGQCPSVDQCMKKVNVRCACNNLKKEWICQDV 775
+ CG PC +KL + C ++CH G+C C L E CQ+
Sbjct: 675 QEAHCGRPCGKKLKCGLYTCRKLCHRAGECEDASLTGTHCEQVCGKTKLFCEHTCQNT 732
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 90/216 (41%), Gaps = 19/216 (8%)
Query: 305 CKRECGGMLQCGKHSCERGCHAGKCGGCP--LQGRRTCPCGKKDY-PSLDCDAEAATCGS 361
C + CG L+CG H C++ CH G CG CP + +C CG+ P C C
Sbjct: 566 CIKTCGRPLKCGSHDCQQICHRGPCGSCPEAVFHEISCNCGRTVLQPPQPCGTRPPECRF 625
Query: 362 TCEKVLGCGRHKCPERCHRGSCV-ETCRLVITKSCRCGGLK-KEVPCY-QELTCERKCQR 418
C++ GCG CH C ++ K C CG K PC+ QE C R C +
Sbjct: 626 NCQRRPGCGHPAVDHHCHPDDISCPKCPFLVDKWCACGKEKLHSQPCHLQEAHCGRPCGK 685
Query: 419 LRNCGRHACRRRCCE-GDCAP-------CPEVCDKRLRCGNHKCLSPCHR----GACAPC 466
CG + CR+ C G+C C +VC K H C + CH A C
Sbjct: 686 KLKCGLYTCRKLCHRAGECEDASLTGTHCEQVCGKTKLFCEHTCQNTCHGQTPCNETAAC 745
Query: 467 PLMKTISCNCGQTFFEVPC-GTEKNQKPPKCSKKCN 501
+SC CG EV C + N P + KC+
Sbjct: 746 SAKAVVSCPCGGRQQEVKCLASSSNPTPTRPEIKCD 781
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,454,020
Number of extensions: 1708948
Number of successful extensions: 5757
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 5334
Number of HSP's successfully gapped: 23
Length of query: 909
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 799
Effective length of database: 11,292,261
Effective search space: 9022516539
Effective search space used: 9022516539
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 161 (66.6 bits)