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Os01g0158900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0196) R2 : 0.9
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.01 (0.0507) R2dC : 0.883 R2C : 0.434
β3 : -2.52 (0.0583) R2dE : 0.468 R2E : 0.014
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.0414) R2dN8 : 0.00496 R2N8 : -0.00539
σ : 0.368
deviance : 62.37
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C
peak time of C : 13.8
E
wheather : temperature
threshold : 14.15
memory length : 221
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.98
open length of G : 9.52

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.16 0.37 10.2 0.00505 3.05 -2.51 -0.438 -0.0696 0.194 13.9 14.46 241 2.1 9.25
61.83 0.366 10.2 0.0328 3.06 -2.52 -0.377 -- 0.199 13.9 14.32 226 2.07 9.39
62.3 0.368 10.2 0.0107 3.02 -2.48 -- -0.176 0.186 13.9 14.49 223 2.02 9.47
62.4 0.368 10.2 0.0126 3.01 -2.48 -- -- 0.179 13.9 14.43 220 2.02 9.48
300.12 0.807 10.2 -0.183 -- -2.25 -- 0.207 0.272 -- 6.624 171 0.00748 8.82
119.54 0.513 10.3 -0.27 3.06 -- -0.509 -- 0.00957 16.4 -- -- -- --
120.24 0.514 10.3 -0.275 3.05 -- -- -- 0.00683 16.4 -- -- -- --
300.15 0.807 10.2 -0.198 -- -2.25 -- -- 0.269 -- 6.912 176 0.00662 8.72
62.37 0.368 10.2 -- 3.01 -2.52 -- -- 0.172 13.8 14.15 221 1.98 9.52
620 1.16 10.3 -0.395 -- -- -- -- -0.0739 -- -- -- -- --
122.23 0.517 10.3 -- 3.06 -- -- -- 0.0374 16.4 -- -- -- --
301.08 0.808 10.2 -- -- -2.26 -- -- 0.295 -- 7.556 187 0.005 8.65
624.1 1.17 10.3 -- -- -- -- -- -0.0301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.53 temperature 15 270 > th dose dependent rect. 2 9
10 69.35 temperature 20 10 > th dose dependent rect. 3 9
109 82.54 temperature 25 90 > th dose independent rect. 3 9
129 83.71 temperature 25 10 > th dose dependent rect. 20 16
135 84.03 temperature 25 10 > th dose independent rect. 7 5
141 84.25 temperature 25 90 > th dose independent rect. 6 6
143 84.43 temperature 25 270 > th dose independent rect. 4 6
154 84.67 temperature 20 10 > th dose dependent sin 4 NA
198 85.70 temperature 30 30 < th dose dependent sin 4 NA
205 85.92 temperature 25 10 > th dose dependent sin 7 NA
245 86.78 temperature 10 30 > th dose dependent sin 4 NA
341 88.96 temperature 30 10 < th dose dependent rect. 6 11
353 89.16 temperature 25 90 < th dose dependent rect. 6 5
364 89.31 temperature 25 90 < th dose dependent rect. 6 9
379 89.53 temperature 30 720 < th dose dependent rect. 5 2
390 89.85 temperature 30 10 < th dose dependent rect. 24 17
415 90.23 temperature 30 90 < th dose dependent rect. 23 17
416 90.24 temperature 10 720 > th dose dependent rect. 24 5
471 90.92 temperature 25 10 < th dose dependent rect. 6 6
529 91.47 temperature 20 270 > th dose independent rect. 6 14
536 91.53 temperature 25 270 < th dose dependent rect. 3 11
562 91.90 temperature 25 270 < th dose dependent rect. 3 8
702 93.39 temperature 25 10 < th dose independent sin 4 NA
748 93.96 temperature 25 90 < th dose independent rect. 23 16
770 94.19 radiation 20 270 < th dose dependent rect. 15 6
771 94.19 radiation 30 270 < th dose dependent rect. 21 11
772 94.21 temperature 25 90 > th dose independent rect. 19 17
791 94.45 radiation 1 270 < th dose independent rect. 21 16
829 94.67 temperature 25 30 > th dose independent sin 4 NA
858 94.86 wind 7 270 < th dose independent rect. 1 11
897 95.15 radiation 1 270 < th dose dependent rect. 21 16
930 95.33 radiation 10 270 < th dose independent rect. 15 6
970 95.55 temperature 25 10 < th dose independent rect. 6 10