BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0145600 Os01g0145600|AK072818
         (71 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0145600  Conserved hypothetical protein                      142   6e-35
Os01g0146101  Conserved hypothetical protein                       84   2e-17

>Os01g0145600 Conserved hypothetical protein
          Length = 71

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MLSCKKTRCISSDLVILEACITCQRAAKEMRHSCVIHNFARRSLYLSTQTAMALLNICSV 60
          MLSCKKTRCISSDLVILEACITCQRAAKEMRHSCVIHNFARRSLYLSTQTAMALLNICSV
Sbjct: 1  MLSCKKTRCISSDLVILEACITCQRAAKEMRHSCVIHNFARRSLYLSTQTAMALLNICSV 60

Query: 61 SLKCISAGIRW 71
          SLKCISAGIRW
Sbjct: 61 SLKCISAGIRW 71



>Os01g0146101 Conserved hypothetical protein
          Length = 98

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%), Gaps = 2/59 (3%)

Query: 15 VILEACIT--CQRAAKEMRHSCVIHNFARRSLYLSTQTAMALLNICSVSLKCISAGIRW 71
          +IL ACIT  CQRAAKEM  SCVIHNFAR SL L TQTAMA L +CSV+L CISAGIRW
Sbjct: 10 LILVACITITCQRAAKEMPRSCVIHNFARISLCLCTQTAMAFLTVCSVALTCISAGIRW 68



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.131    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,093,600
Number of extensions: 54935
Number of successful extensions: 226
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 149 (62.0 bits)