Os01g0145600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0145600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.94 | 0.455 | 9 | -0.435 | 0.639 | 1.18 | -1.01 | 0.521 | -0.0441 | 1.88 | 20.8 | 510 | -- | -- |
| 94.87 | 0.454 | 9.01 | -0.522 | 0.631 | 1.15 | -0.966 | -- | -0.0572 | 1.94 | 20.8 | 509 | -- | -- |
| 97.59 | 0.46 | 9 | -0.403 | 0.642 | 1.17 | -- | 0.5 | -0.0359 | 1.41 | 20.79 | 499 | -- | -- |
| 98.39 | 0.462 | 9.02 | -0.511 | 0.634 | 1.13 | -- | -- | -0.0595 | 1.37 | 20.8 | 508 | -- | -- |
| 117.69 | 0.505 | 9.01 | -0.48 | -- | 1.32 | -- | 0.433 | -0.0575 | -- | 20.9 | 796 | -- | -- |
| 137.78 | 0.55 | 8.96 | -0.142 | 0.657 | -- | -0.855 | -- | 0.2 | 0.911 | -- | -- | -- | -- |
| 140.36 | 0.555 | 8.96 | -0.109 | 0.661 | -- | -- | -- | 0.206 | 0.35 | -- | -- | -- | -- |
| 116.94 | 0.504 | 9.02 | -0.545 | -- | 1.22 | -- | -- | -0.111 | -- | 21.25 | 846 | -- | -- |
| 104.69 | 0.477 | 9 | -- | 0.656 | 1 | -- | -- | 0.019 | 1.18 | 20.78 | 508 | -- | -- |
| 167.85 | 0.605 | 8.95 | -0.0868 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 140.68 | 0.555 | 8.96 | -- | 0.66 | -- | -- | -- | 0.218 | 0.342 | -- | -- | -- | -- |
| 123.88 | 0.518 | 9 | -- | -- | 1.07 | -- | -- | -0.0162 | -- | 21.2 | 789 | -- | -- |
| 168.05 | 0.605 | 8.94 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.76 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 2 | 97.42 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 18 |
| 3 | 97.46 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 16 |
| 6 | 97.62 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 22 |
| 31 | 98.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 44 | 99.29 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 50 | 99.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 87 | 100.21 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 20 |
| 102 | 100.40 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 131 | 100.73 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 139 | 100.78 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 155 | 101.02 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 156 | 101.02 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 159 | 101.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 212 | 101.36 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 220 | 101.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 222 | 101.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 223 | 101.43 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 248 | 101.55 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 22 |
| 253 | 101.56 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 281 | 101.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 284 | 101.65 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 288 | 101.67 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 321 | 101.77 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 348 | 101.86 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 386 | 101.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 426 | 102.13 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 545 | 102.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 561 | 102.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 573 | 102.55 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 23 |
| 609 | 102.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 617 | 102.67 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 718 | 102.99 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 23 |
| 825 | 103.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 840 | 103.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 878 | 103.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |