BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0144300 Os01g0144300|AK072770
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0144300  Conserved hypothetical protein                      634   0.0  
Os03g0678950                                                      311   4e-85

>Os01g0144300 Conserved hypothetical protein
          Length = 337

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/337 (91%), Positives = 310/337 (91%)

Query: 1   MNEIRKLKRGISTKRGDHPVQNGQNPVDEWEEQQRYWPSPRAPPVSPMGSPRTPNGSQKK 60
           MNEIRKLKRGISTKRGDHPVQNGQNPVDEWEEQQRYWPSPRAPPVSPMGSPRTPNGSQKK
Sbjct: 1   MNEIRKLKRGISTKRGDHPVQNGQNPVDEWEEQQRYWPSPRAPPVSPMGSPRTPNGSQKK 60

Query: 61  PVLGKVKSXXXXXXXXXXXXXXPQEDMMWTPRAGPSADDSKEHNDADYGSPSTARHPHSS 120
           PVLGKVKS              PQEDMMWTPRAGPSADDSKEHNDADYGSPSTARHPHSS
Sbjct: 61  PVLGKVKSKAKKWMHLLHHKKKPQEDMMWTPRAGPSADDSKEHNDADYGSPSTARHPHSS 120

Query: 121 CESACAPEVFLEASSRQNSPLPSPTAHKEQPYFKVSSRFESEMKEANEMLRESKQLRVNT 180
           CESACAPEVFLEASSRQNSPLPSPTAHKEQPYFKVSSRFESEMKEANEMLRESKQLRVNT
Sbjct: 121 CESACAPEVFLEASSRQNSPLPSPTAHKEQPYFKVSSRFESEMKEANEMLRESKQLRVNT 180

Query: 181 TKPKTVTFAPILEQGPEPVKNDWHSKELSETATEIFSHAYAIVCEAVLRMVSIIQGAMSS 240
           TKPKTVTFAPILEQGPEPVKNDWHSKELSETATEIFSHAYAIVCEAVLRMVSIIQGAMSS
Sbjct: 181 TKPKTVTFAPILEQGPEPVKNDWHSKELSETATEIFSHAYAIVCEAVLRMVSIIQGAMSS 240

Query: 241 YNIDRRQMLEKIVSFKRYMMLKLAPGEGDKVLSEVITEAVLDMFDAWCENVERPLVQRAK 300
           YNIDRRQMLEKIVSFKRYMMLKLAPGEGDKVLSEVITEAVLDMFDAWCENVERPLVQRAK
Sbjct: 241 YNIDRRQMLEKIVSFKRYMMLKLAPGEGDKVLSEVITEAVLDMFDAWCENVERPLVQRAK 300

Query: 301 EVYSWFXXXXXXXXXXXXXSTHPCVYEDAEEFYSLEN 337
           EVYSWF             STHPCVYEDAEEFYSLEN
Sbjct: 301 EVYSWFLPERREELPPVPLSTHPCVYEDAEEFYSLEN 337



>Os03g0678950 
          Length = 246

 Score =  311 bits (797), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/290 (62%), Positives = 189/290 (65%), Gaps = 44/290 (15%)

Query: 48  MGSPRTPNGSQKKPVLGKVKSXXXXXXXXXXXXXXPQEDMMWTPRAGPSADDSKEHNDAD 107
           MGSPRTPNGSQKKPVLGKVKS              PQEDM   P    +A  S      D
Sbjct: 1   MGSPRTPNGSQKKPVLGKVKSKAKKWMHLLHHKKKPQEDMQ-DPVQTAAAAMSTTMQTTD 59

Query: 108 YGSPSTARHPHSSCESACAPEVFLEASSRQNSPLPSPTAHKEQPYFKVSSRFESEMKEAN 167
                   HPHSSCESACAPEV++EAS RQNSPLPSPTAH EQ YFK+SSRF+SEMKEA 
Sbjct: 60  -PQAQLDIHPHSSCESACAPEVYMEASPRQNSPLPSPTAHNEQQYFKISSRFKSEMKEA- 117

Query: 168 EMLRESKQLRVNTTKPKTVTFAPILEQGPEPVKNDWHSKELSETATEIFSHAYAIVCEAV 227
            MLRESKQLRVNTTKPKTVTFAPILEQG E VKNDWH KEL ETATEIFSHAYAIV EAV
Sbjct: 118 -MLRESKQLRVNTTKPKTVTFAPILEQGAETVKNDWHRKELWETATEIFSHAYAIVYEAV 176

Query: 228 LRMVSIIQGAMSSYNIDRRQMLEKIVSFKRYMMLKLAPGEGDKVLSEVITEAVLDMFDAW 287
           LRMVSIIQ AM SYNI RRQMLEKI+SF RY+MLKLAPGEGDK   +     V       
Sbjct: 177 LRMVSIIQDAMLSYNIGRRQMLEKIISFNRYLMLKLAPGEGDKKGEKSYLHPV------- 229

Query: 288 CENVERPLVQRAKEVYSWFXXXXXXXXXXXXXSTHPCVYEDAEEFYSLEN 337
                                           STHPCVYE  EEF SLEN
Sbjct: 230 ------------------------------ALSTHPCVYE--EEF-SLEN 246



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,492,221
Number of extensions: 482563
Number of successful extensions: 1679
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)