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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0144300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0144) R2 : 0.0254
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0303) R2dN8 : 0.0328 R2N8 : 0.0254
σ : 0.271
deviance : 33.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.29 0.267 2.9 -0.0691 0.0392 0.0975 0.106 0.964 0.0973 7.75 80 1247 -- --
32.62 0.266 2.89 0.0166 0.0405 0.2 0.156 -- 0.129 7.73 76 2787 -- --
32.27 0.265 2.9 -0.0646 0.0321 0.0986 -- 0.927 0.0954 6.95 80.51 1159 -- --
32.67 0.266 2.89 0.0231 0.044 0.207 -- -- 0.131 7.41 75.73 2787 -- --
32.32 0.265 2.9 -0.0613 -- 0.0981 -- 0.905 0.0976 -- 80.33 1111 -- --
33.47 0.271 2.9 0.0036 0.0407 -- 0.184 -- 0.105 10.3 -- -- -- --
33.6 0.271 2.9 0.0104 0.0429 -- -- -- 0.105 9.05 -- -- -- --
32.4 0.265 2.89 -0.0288 -- 0.206 -- -- 0.13 -- 72 10732 -- --
32.68 0.266 2.89 -- 0.0441 0.205 -- -- 0.128 7.38 75.22 2787 -- --
33.71 0.271 2.9 0.0103 -- -- -- -- 0.106 -- -- -- -- --
33.6 0.271 2.9 -- 0.0429 -- -- -- 0.104 9.03 -- -- -- --
32.14 0.264 2.89 -- -- 0.296 -- -- 0.162 -- 72.45 13956 -- --
33.71 0.271 2.9 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.15 radiation 1.0 30 > th dose dependent rect. 17 14
2 31.20 precipitation 0.1 30 < th dose independent rect. 23 23
3 31.20 precipitation 0.1 30 < th dose dependent rect. 23 23
5 31.43 wind 9.0 10 > th dose independent rect. 18 1
8 31.43 wind 9.0 10 > th dose dependent rect. 18 1
11 31.43 humidity 90.0 10 < th dose dependent rect. 22 9
12 31.45 radiation 1.0 30 > th dose dependent rect. 18 1
34 31.48 wind 3.0 43200 < th dose independent rect. 2 1
57 31.54 wind 3.0 43200 > th dose independent rect. 6 1
83 31.55 wind 3.0 43200 < th dose independent rect. 6 1
86 31.57 humidity 90.0 14400 > th dose independent rect. 15 7
87 31.58 wind 3.0 43200 > th dose independent rect. 2 1
88 31.58 precipitation 0.1 1440 < th dose independent rect. 5 1
95 31.58 precipitation 0.1 1440 < th dose dependent rect. 5 1
116 31.62 humidity 90.0 30 < th dose independent rect. 22 9
119 31.62 humidity 90.0 14400 > th dose independent rect. 7 16
127 31.63 precipitation 0.1 1440 > th dose dependent rect. 5 1
128 31.64 temperature 25.0 10 > th dose independent rect. 22 2
134 31.65 humidity 90.0 14400 > th dose independent rect. 19 1
136 31.65 wind 3.0 43200 > th dose independent rect. 1 3
140 31.65 wind 3.0 43200 < th dose independent rect. 1 6
144 31.65 wind 1.0 43200 > th dose dependent rect. 6 1
145 31.65 wind 5.0 43200 < th dose dependent rect. 6 1
146 31.66 humidity 90.0 14400 > th dose independent sin 20 NA
150 31.66 humidity 90.0 14400 < th dose independent rect. 15 7
152 31.66 humidity 90.0 14400 < th dose independent rect. 7 15
158 31.66 humidity 80.0 14400 > th dose dependent rect. 8 3
161 31.67 temperature 25.0 90 > th dose independent rect. 22 1
163 31.67 wind 3.0 43200 > th dose independent rect. 1 6
172 31.67 wind 3.0 14400 < th dose dependent rect. 1 4
174 31.67 humidity 80.0 14400 > th dose dependent rect. 8 11
181 31.68 humidity 80.0 14400 > th dose independent rect. 8 6
185 31.68 wind 3.0 43200 > th dose independent rect. 23 8
201 31.68 wind 3.0 14400 < th dose dependent rect. 3 2
203 31.68 humidity 90.0 14400 > th dose dependent rect. 15 7
204 31.68 humidity 90.0 14400 > th dose dependent rect. 13 9
210 31.69 humidity 90.0 14400 < th dose independent rect. 7 1
211 31.69 atmosphere 1005.0 90 > th dose independent rect. 22 1
237 31.69 wind 3.0 43200 < th dose dependent rect. 1 2
239 31.69 radiation 1.0 30 > th dose dependent rect. 5 2
241 31.69 humidity 80.0 14400 > th dose dependent rect. 16 3
245 31.69 wind 3.0 43200 < th dose dependent rect. 5 6
266 31.70 humidity 90.0 14400 < th dose independent rect. 19 3
267 31.70 precipitation 0.1 4320 < th dose independent rect. 14 3
280 31.70 wind 3.0 43200 < th dose independent rect. 1 14
284 31.70 precipitation 0.1 4320 < th dose dependent rect. 14 3
296 31.71 humidity 90.0 14400 > th dose independent rect. 7 1
319 31.71 humidity 80.0 14400 > th dose dependent rect. 17 1
341 31.72 humidity 90.0 14400 < th dose independent sin 21 NA
342 31.72 wind 9.0 4320 < th dose independent rect. 23 1
345 31.72 precipitation 0.1 1440 > th dose independent rect. 5 1
346 31.72 humidity 80.0 14400 > th dose independent rect. 9 2
349 31.72 precipitation 0.1 4320 > th dose independent rect. 15 2
359 31.72 wind 3.0 43200 < th dose independent rect. 20 12
372 31.72 radiation 20.0 4320 < th dose dependent rect. 23 1
385 31.72 wind 3.0 43200 < th dose dependent rect. 22 12
393 31.73 wind 3.0 43200 < th dose independent sin 7 NA
396 31.73 wind 3.0 43200 < th dose independent sin 5 NA
424 31.73 wind 3.0 43200 > th dose independent rect. 1 14
431 31.73 humidity 60.0 14400 > th dose dependent rect. 17 1
439 31.73 humidity 90.0 10 < th dose dependent rect. 1 6
462 31.74 temperature 10.0 1440 > th dose independent rect. 23 1
465 31.74 temperature 30.0 1440 < th dose independent rect. 23 1
469 31.74 humidity 50.0 1440 > th dose independent rect. 23 1
480 31.74 atmosphere 995.0 1440 > th dose independent rect. 23 1
481 31.74 radiation 1.0 1440 < th dose independent rect. 23 1
515 31.74 wind 3.0 43200 > th dose independent rect. 20 12
524 31.74 temperature 15.0 30 > th dose independent rect. 23 23
525 31.74 temperature 10.0 1440 > th dose independent rect. 24 23
528 31.74 wind 3.0 43200 < th dose dependent sin 7 NA
531 31.74 humidity 80.0 14400 > th dose dependent sin 22 NA
534 31.74 temperature 15.0 30 > th dose dependent rect. 22 1
538 31.74 atmosphere 1000.0 30 > th dose dependent rect. 22 1
540 31.74 radiation 1.0 1440 < th dose dependent rect. 23 1
574 31.75 wind 3.0 43200 > th dose independent sin 5 NA
577 31.75 wind 1.0 30 > th dose independent rect. 22 1
578 31.75 wind 3.0 30 < th dose independent rect. 22 1
582 31.75 temperature 10.0 30 > th dose independent rect. 22 1
585 31.75 temperature 30.0 30 < th dose independent rect. 22 1
586 31.75 humidity 50.0 30 > th dose independent rect. 22 1
590 31.75 humidity 90.0 30 < th dose independent rect. 22 1
591 31.75 atmosphere 995.0 30 > th dose independent rect. 22 1
593 31.75 atmosphere 1010.0 30 < th dose independent rect. 22 1
595 31.75 radiation 1.0 30 < th dose independent rect. 22 1
600 31.75 precipitation 0.1 30 < th dose independent rect. 22 1
613 31.75 humidity 80.0 14400 < th dose independent rect. 8 7
655 31.75 wind 5.0 30 < th dose dependent rect. 22 1
660 31.75 humidity 50.0 30 > th dose dependent rect. 22 1
664 31.75 radiation 1.0 30 < th dose dependent rect. 22 1
669 31.75 precipitation 0.1 30 < th dose dependent rect. 22 1
687 31.75 wind 3.0 43200 < th dose dependent rect. 22 9
699 31.76 wind 3.0 43200 > th dose independent sin 7 NA
739 31.76 humidity 90.0 30 < th dose dependent rect. 22 1
782 31.77 humidity 90.0 14400 < th dose independent rect. 7 4
811 31.77 wind 1.0 30 > th dose dependent rect. 22 1
815 31.77 atmosphere 1015.0 30 < th dose dependent rect. 22 1
909 31.78 temperature 30.0 30 < th dose dependent rect. 22 1
926 31.78 wind 1.0 14400 > th dose dependent rect. 24 6