BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0141100 Os01g0141100|AK067644
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0141100  Similar to Salt-induced AAA-Type ATPase             451   e-127
Os01g0141300                                                      207   5e-54

>Os01g0141100 Similar to Salt-induced AAA-Type ATPase
          Length = 268

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/268 (84%), Positives = 227/268 (84%)

Query: 1   MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60
           MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT
Sbjct: 1   MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60

Query: 61  EYLRRAEEIRAVLDEXXXXXXXXXXXXXXXTRPXXXXXXXXXXXXXSEQSKLRAGLNSAI 120
           EYLRRAEEIRAVLDE               TRP             SEQSKLRAGLNSAI
Sbjct: 61  EYLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDGEGGGDDSEQSKLRAGLNSAI 120

Query: 121 ITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFCMVHQEQESXXXXXXXXXXXXXHF 180
           ITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFCMVHQEQES             HF
Sbjct: 121 ITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFCMVHQEQESLIWLKLLQLRLILHF 180

Query: 181 SVYLHQTLFQNGWERVKNLLQTFSKWLEKTLLPLSSLMKLIHCVVNEEKEMRVKLLGESK 240
           SVYLHQTLFQNGWERVKNLLQTFSKWLEKTLLPLSSLMKLIHCVVNEEKEMRVKLLGESK
Sbjct: 181 SVYLHQTLFQNGWERVKNLLQTFSKWLEKTLLPLSSLMKLIHCVVNEEKEMRVKLLGESK 240

Query: 241 LNFLCKCRVLAIMMTKYWFLLLQTRHML 268
           LNFLCKCRVLAIMMTKYWFLLLQTRHML
Sbjct: 241 LNFLCKCRVLAIMMTKYWFLLLQTRHML 268



>Os01g0141300 
          Length = 448

 Score =  207 bits (528), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 114/157 (72%), Gaps = 21/157 (13%)

Query: 1   MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60
           MYSNFKEQAIEYVKQAVQEDN GNYVKAFPLYMNALEYFKTHLKYEK+PKIK+AI AKFT
Sbjct: 1   MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60

Query: 61  EYLRRAEEIRAVLDEXXXXXXXXXXXXXXXTRPXXXXXXXXXXXXXSEQSKLRAGLNSAI 120
           EYLRRAEEIRAVLD                                SEQ+K R  L SAI
Sbjct: 61  EYLRRAEEIRAVLD---------------------GHIGGGGGGGDSEQAKPRGMLRSAI 99

Query: 121 ITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFC 157
           +  KP++KW+DVAGLESAK+ALQEA ILP+KFP FF 
Sbjct: 100 VAAKPSVKWSDVAGLESAKEALQEAAILPIKFPHFFT 136



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,380,984
Number of extensions: 190317
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 3
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)