BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0138900 Os01g0138900|AK058378
         (446 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0138900  Mandelate racemase/muconate lactonizing enzyme...   713   0.0  
AK072417                                                          328   4e-90

>Os01g0138900 Mandelate racemase/muconate lactonizing enzyme family protein
          Length = 446

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/429 (84%), Positives = 364/429 (84%)

Query: 18  QNHGSIMSGSTRAQVLPVGRXXXXXXXXXXTRLRXXXXXXXXXXXXXXXXETFGFDALKE 77
           QNHGSIMSGSTRAQVLPVGR          TRLR                ETFGFDALKE
Sbjct: 18  QNHGSIMSGSTRAQVLPVGRQQQQPPAGGATRLRAVSPSPSPTPPAPQPAETFGFDALKE 77

Query: 78  AFSVDVVAAEARPLNVPLAAPFTIASSRLDAVSNVAVRVELRSGAVGWGEAPVLPSVTAE 137
           AFSVDVVAAEARPLNVPLAAPFTIASSRLDAVSNVAVRVELRSGAVGWGEAPVLPSVTAE
Sbjct: 78  AFSVDVVAAEARPLNVPLAAPFTIASSRLDAVSNVAVRVELRSGAVGWGEAPVLPSVTAE 137

Query: 138 DQXXXXXXXXXXXXXXXXXXXXXXXXVLQDVASALPGHDFASARAGVEMALIDAIANSIR 197
           DQ                        VLQDVASALPGHDFASARAGVEMALIDAIANSIR
Sbjct: 138 DQPGALAAATRACGALAGAPAAPLGAVLQDVASALPGHDFASARAGVEMALIDAIANSIR 197

Query: 198 IPLWRLFGGAXXXXXXXXXXXXXXXNEAAQLAAKYRGQGFQTLKLKVGKNLNSDIEVLKA 257
           IPLWRLFGGA               NEAAQLAAKYRGQGFQTLKLKVGKNLNSDIEVLKA
Sbjct: 198 IPLWRLFGGASDSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNLNSDIEVLKA 257

Query: 258 IRLAHPDCSFILDANEGYTANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAK 317
           IRLAHPDCSFILDANEGYTANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAK
Sbjct: 258 IRLAHPDCSFILDANEGYTANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAK 317

Query: 318 EKYRVAVAADESCRSLLDAQKIMDGNLAHVINIKLAKLGILGALEVIDAARKARIALMIG 377
           EKYRVAVAADESCRSLLDAQKIMDGNLAHVINIKLAKLGILGALEVIDAARKARIALMIG
Sbjct: 318 EKYRVAVAADESCRSLLDAQKIMDGNLAHVINIKLAKLGILGALEVIDAARKARIALMIG 377

Query: 378 GMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGF 437
           GMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGF
Sbjct: 378 GMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGF 437

Query: 438 LHLDNNGLK 446
           LHLDNNGLK
Sbjct: 438 LHLDNNGLK 446



>AK072417 
          Length = 167

 Score =  328 bits (841), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 161/165 (97%)

Query: 282 EALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAKEKYRVAVAADESCRSLLDAQKIMD 341
           EA    NEMGVTPVLFEQPVHRDDWEGLRDVSIVAKEKYRVAVAADESCRSLLDAQKIMD
Sbjct: 3   EAFLIKNEMGVTPVLFEQPVHRDDWEGLRDVSIVAKEKYRVAVAADESCRSLLDAQKIMD 62

Query: 342 GNLAHVINIKLAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAGLGCFSF 401
           GNLAHVINIKLAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAGLGCFSF
Sbjct: 63  GNLAHVINIKLAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAGLGCFSF 122

Query: 402 VDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGFLHLDNNGLK 446
           VDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGFLHLDNNGLK
Sbjct: 123 VDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGFLHLDNNGLK 167



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,367,185
Number of extensions: 396754
Number of successful extensions: 875
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)