Os01g0138900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mandelate racemase/muconate lactonizing enzyme family protein.
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Os01g0138900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mandelate racemase/muconate lactonizing enzyme family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.92 | 0.607 | 12.3 | -3.04 | 2.63 | 1.16 | 2.18 | -1.59 | -0.665 | 15.3 | 19.5 | 1625 | -- | -- |
| 170.4 | 0.608 | 12.3 | -3.02 | 2.66 | 1.49 | 2.08 | -- | -0.673 | 15.3 | 18.97 | 2957 | -- | -- |
| 178.74 | 0.623 | 12.3 | -3.16 | 2.68 | 0.984 | -- | -1.86 | -0.693 | 15.1 | 19.5 | 2638 | -- | -- |
| 183.58 | 0.631 | 12.3 | -2.97 | 2.7 | 1.48 | -- | -- | -0.665 | 15.2 | 19 | 2706 | -- | -- |
| 387.74 | 0.917 | 12.2 | -2.52 | -- | 1.32 | -- | 0.192 | -0.697 | -- | 25.8 | 3 | -- | -- |
| 203.14 | 0.668 | 12.2 | -2.29 | 2.63 | -- | 2.16 | -- | -0.369 | 15.3 | -- | -- | -- | -- |
| 217.92 | 0.691 | 12.2 | -2.25 | 2.64 | -- | -- | -- | -0.357 | 15.2 | -- | -- | -- | -- |
| 376.55 | 0.904 | 12.3 | -2.67 | -- | 1.48 | -- | -- | -0.857 | -- | 25.8 | 11 | -- | -- |
| 269.74 | 0.765 | 12.1 | -- | 2.8 | -1.23 | -- | -- | 0.19 | 15.2 | 21.7 | 47520 | -- | -- |
| 612.6 | 1.16 | 12.2 | -2.36 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 350.76 | 0.876 | 12.1 | -- | 2.68 | -- | -- | -- | -0.107 | 15.2 | -- | -- | -- | -- |
| 565.16 | 1.11 | 12.2 | -- | -- | 1.4 | -- | -- | -0.596 | -- | 25.76 | 19 | -- | -- |
| 759.16 | 1.29 | 12.1 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.05 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 6 | 152.93 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 21 |
| 7 | 153.01 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 9 | 153.55 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 21 |
| 11 | 153.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 25 | 155.74 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 55 | 158.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 71 | 159.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 118 | 161.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 119 | 161.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 145 | 162.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 171 | 163.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 180 | 163.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 181 | 163.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 212 | 164.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 223 | 164.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 252 | 164.64 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 16 | 15 |
| 253 | 164.65 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 279 | 164.85 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 311 | 165.06 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 9 |
| 373 | 165.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 386 | 165.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 402 | 165.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 409 | 165.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 419 | 165.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 470 | 166.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 471 | 166.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 490 | 166.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 493 | 166.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 529 | 166.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 536 | 166.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 539 | 166.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 546 | 166.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 559 | 166.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 590 | 166.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 600 | 166.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 605 | 166.65 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 623 | 166.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 655 | 166.77 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 663 | 166.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 679 | 166.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 688 | 166.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 691 | 166.87 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 692 | 166.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 706 | 166.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 710 | 166.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 715 | 166.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 743 | 166.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 759 | 167.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 767 | 167.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 801 | 167.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 819 | 167.13 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 824 | 167.14 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 832 | 167.16 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 840 | 167.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 847 | 167.19 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 881 | 167.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 884 | 167.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 945 | 167.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 951 | 167.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 973 | 167.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |