BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0138600 Os01g0138600|AK100982
         (168 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0138600  phosphotransferase system, PEP-utilising enzym...   309   5e-85
Os06g0245600  phosphotransferase system, PEP-utilising enzym...   278   2e-75

>Os01g0138600 phosphotransferase system, PEP-utilising enzyme, N-terminal domain
           containing protein
          Length = 168

 Score =  309 bits (792), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/168 (90%), Positives = 152/168 (90%)

Query: 1   MEQLNAKLYDKYTALKKRKLLDEGLDQKRAADIKELQQAMKDWVADLQGENERLIAKXXX 60
           MEQLNAKLYDKYTALKKRKLLDEGLDQKRAADIKELQQAMKDWVADLQGENERLIAK   
Sbjct: 1   MEQLNAKLYDKYTALKKRKLLDEGLDQKRAADIKELQQAMKDWVADLQGENERLIAKLTQ 60

Query: 61  XXXXXXXXXXXXXDETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEMIIENQTP 120
                        DETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEMIIENQTP
Sbjct: 61  KEQQLVEVQTLLLDETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEMIIENQTP 120

Query: 121 IPPAKKTPKSKSRERNIHFIEKATVPCNGFQEEGRDLDSCRRHMSISG 168
           IPPAKKTPKSKSRERNIHFIEKATVPCNGFQEEGRDLDSCRRHMSISG
Sbjct: 121 IPPAKKTPKSKSRERNIHFIEKATVPCNGFQEEGRDLDSCRRHMSISG 168



>Os06g0245600 phosphotransferase system, PEP-utilising enzyme, N-terminal domain
           containing protein
          Length = 270

 Score =  278 bits (710), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 142/168 (84%)

Query: 1   MEQLNAKLYDKYTALKKRKLLDEGLDQKRAADIKELQQAMKDWVADLQGENERLIAKXXX 60
           MEQLNAKLY +YTALKKRKLLDEGLDQKRAADI EL+QAMKDWVA+LQ ENERL+AK   
Sbjct: 1   MEQLNAKLYHRYTALKKRKLLDEGLDQKRAADINELRQAMKDWVAELQSENERLVAKLTQ 60

Query: 61  XXXXXXXXXXXXXDETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEMIIENQTP 120
                        DETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEM IENQTP
Sbjct: 61  KEQQLVEAQTLLLDETRKTKELNSEILKLQCLLAEKNDANHIATGSPDTTAEMTIENQTP 120

Query: 121 IPPAKKTPKSKSRERNIHFIEKATVPCNGFQEEGRDLDSCRRHMSISG 168
           I PAKKTPKS SRERNI  IEKA VP NGFQEEGRDLDSCRRHMSISG
Sbjct: 121 ISPAKKTPKSNSRERNIRSIEKAIVPRNGFQEEGRDLDSCRRHMSISG 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,866,400
Number of extensions: 164052
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 152 (63.2 bits)