FiT-DB / Search/ Help/ Sample detail

Os01g0138600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : phosphotransferase system, PEP-utilising enzyme, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.77 (0.0231) R2 : 0.354
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.929 (0.0605) R2dC : 0.336 R2C : 0.324
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0486) R2dN8 : 0.0302 R2N8 : 0.0177
σ : 0.436
deviance : 86.85
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.59 0.392 8.81 -0.377 0.907 0.599 -0.273 0.193 0.0443 17.6 51.96 4085 -- --
69.63 0.389 8.81 -0.365 0.91 0.647 -0.28 -- 0.0425 17.6 51.55 4085 -- --
69.59 0.389 8.82 -0.419 0.904 0.513 -- 0.399 0.0367 17.7 52.19 4040 -- --
69.8 0.389 8.81 -0.364 0.908 0.654 -- -- 0.0381 17.7 51.04 4060 -- --
112.15 0.493 8.82 -0.446 -- 0.495 -- 0.529 0.0247 -- 52.74 4126 -- --
77.55 0.413 8.79 -0.59 0.921 -- -0.255 -- 0.133 17.4 -- -- -- --
77.71 0.413 8.79 -0.589 0.92 -- -- -- 0.132 17.4 -- -- -- --
112.14 0.493 8.8 -0.429 -- 0.64 -- -- -0.00771 -- 53 4084 -- --
72.56 0.397 8.8 -- 0.9 0.83 -- -- 0.066 17.7 50 4049 -- --
121.72 0.516 8.77 -0.62 -- -- -- -- 0.109 -- -- -- -- --
86.85 0.436 8.77 -- 0.929 -- -- -- 0.198 17.4 -- -- -- --
115.17 0.5 8.79 -- -- 0.878 -- -- 0.0423 -- 50.18 4137 -- --
131.86 0.536 8.76 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.36 temperature 10.0 270 > th dose dependent rect. 18 8
2 60.58 temperature 15.0 270 > th dose independent rect. 18 8
4 60.82 temperature 20.0 90 > th dose independent rect. 8 7
5 61.18 temperature 10.0 90 > th dose dependent rect. 8 7
6 61.32 atmosphere 1010.0 90 < th dose independent rect. 8 7
7 61.40 temperature 10.0 270 > th dose dependent rect. 18 19
12 61.63 wind 1.0 270 > th dose independent rect. 13 17
13 61.72 atmosphere 1010.0 30 < th dose independent rect. 20 19
14 61.78 temperature 10.0 30 > th dose dependent rect. 20 8
15 61.86 temperature 15.0 270 > th dose independent rect. 7 19
19 62.07 precipitation 0.1 270 < th dose independent rect. 3 15
20 62.07 precipitation 0.1 270 < th dose dependent rect. 3 15
21 62.08 wind 9.0 90 < th dose independent rect. 8 7
22 62.09 atmosphere 995.0 90 > th dose independent rect. 8 7
24 62.11 temperature 10.0 30 > th dose dependent rect. 20 19
31 62.19 temperature 15.0 270 > th dose independent rect. 19 18
34 62.21 precipitation 0.1 90 < th dose independent rect. 8 7
36 62.21 precipitation 0.1 90 < th dose dependent rect. 8 7
37 62.23 temperature 10.0 10 > th dose dependent rect. 9 6
39 62.24 temperature 20.0 10 > th dose independent rect. 9 6
40 62.25 radiation 10.0 270 < th dose independent rect. 17 9
42 62.26 humidity 90.0 90 < th dose independent rect. 8 7
49 62.29 temperature 10.0 90 > th dose independent rect. 15 17
50 62.30 humidity 50.0 90 > th dose independent rect. 8 7
54 62.34 humidity 60.0 270 > th dose independent rect. 18 9
62 62.39 radiation 10.0 270 < th dose dependent rect. 18 9
65 62.41 radiation 40.0 90 < th dose independent rect. 15 17
73 62.43 wind 9.0 270 < th dose independent rect. 18 9
79 62.43 temperature 10.0 270 > th dose independent rect. 3 15
80 62.43 atmosphere 1015.0 270 < th dose independent rect. 3 15
102 62.58 temperature 15.0 270 > th dose independent rect. 6 21
106 62.62 temperature 30.0 270 < th dose independent rect. 18 8
107 62.62 precipitation 0.1 90 < th dose independent rect. 15 17
108 62.62 precipitation 0.1 90 < th dose dependent rect. 15 17
119 62.69 atmosphere 995.0 270 > th dose independent rect. 18 9
126 62.73 atmosphere 1000.0 270 > th dose dependent rect. 23 8
127 62.75 wind 1.0 90 > th dose independent rect. 8 7
130 62.76 wind 9.0 90 < th dose independent rect. 15 17
135 62.80 atmosphere 1015.0 270 < th dose independent rect. 18 8
136 62.82 radiation 1.0 90 > th dose independent rect. 8 7
137 62.83 precipitation 0.1 270 < th dose independent rect. 18 8
140 62.83 precipitation 0.1 270 < th dose dependent rect. 18 8
150 62.95 humidity 50.0 270 > th dose independent rect. 7 19
154 62.97 precipitation 0.1 270 < th dose independent rect. 13 18
155 62.97 precipitation 0.1 270 < th dose dependent rect. 13 18
185 63.12 wind 9.0 270 < th dose independent rect. 2 16
204 63.24 wind 5.0 270 < th dose independent rect. 2 5
211 63.27 precipitation 0.1 270 < th dose independent rect. 6 8
212 63.27 temperature 10.0 270 > th dose independent rect. 13 18
213 63.27 precipitation 0.1 270 < th dose dependent rect. 6 8
221 63.34 atmosphere 995.0 270 > th dose independent rect. 6 8
222 63.34 atmosphere 1015.0 270 < th dose independent rect. 6 8
229 63.37 temperature 20.0 30 > th dose independent rect. 20 8
241 63.45 atmosphere 1005.0 90 > th dose dependent rect. 2 6
250 63.52 humidity 50.0 270 > th dose independent rect. 6 21
257 63.56 wind 9.0 270 < th dose independent rect. 13 18
274 63.68 temperature 20.0 30 > th dose independent rect. 9 19
302 63.77 atmosphere 995.0 90 > th dose independent rect. 15 17
303 63.77 radiation 1.0 90 > th dose independent rect. 15 17
305 63.79 temperature 20.0 10 > th dose independent rect. 20 19
309 63.80 radiation 1.0 90 < th dose dependent sin 12 NA
312 63.82 atmosphere 1010.0 30 < th dose independent rect. 9 19
319 63.86 precipitation 0.1 270 < th dose independent rect. 2 5
322 63.86 precipitation 0.1 270 < th dose dependent rect. 2 5
325 63.89 wind 5.0 270 < th dose independent rect. 3 3
326 63.89 wind 9.0 10 < th dose independent rect. 8 7
335 63.93 humidity 90.0 10 < th dose independent rect. 2 6
336 63.93 temperature 10.0 10 > th dose independent rect. 8 7
338 63.93 atmosphere 995.0 10 > th dose independent rect. 8 7
340 63.93 precipitation 0.1 10 < th dose independent rect. 8 7
341 63.93 temperature 10.0 10 > th dose independent rect. 15 17
342 63.93 precipitation 0.1 10 < th dose dependent rect. 8 7
344 63.94 humidity 50.0 270 > th dose dependent rect. 18 8
350 63.97 temperature 10.0 10 > th dose dependent rect. 9 19
376 64.03 temperature 10.0 1440 > th dose independent rect. 9 7
379 64.03 radiation 1.0 10 > th dose independent rect. 8 7
380 64.03 temperature 10.0 1440 > th dose independent rect. 16 17
390 64.06 wind 9.0 270 < th dose independent rect. 7 19
392 64.07 atmosphere 995.0 270 > th dose independent rect. 2 16
409 64.12 radiation 40.0 90 < th dose independent rect. 4 16
410 64.12 wind 9.0 270 < th dose dependent rect. 2 5
425 64.15 humidity 90.0 10 < th dose independent rect. 9 6
427 64.17 radiation 1.0 90 < th dose independent sin 12 NA
461 64.25 atmosphere 1005.0 270 > th dose dependent rect. 2 3
475 64.29 precipitation 0.1 270 < th dose independent rect. 3 3
476 64.29 precipitation 0.1 10 < th dose independent rect. 15 17
478 64.29 precipitation 0.1 270 < th dose dependent rect. 3 3
480 64.29 precipitation 0.1 10 < th dose dependent rect. 15 17
496 64.35 temperature 10.0 270 > th dose independent rect. 2 5
498 64.35 temperature 30.0 270 < th dose independent rect. 2 5
499 64.35 humidity 50.0 270 > th dose independent rect. 2 5
501 64.35 atmosphere 995.0 270 > th dose independent rect. 2 5
502 64.35 atmosphere 1015.0 270 < th dose independent rect. 2 5
503 64.35 radiation 40.0 270 < th dose independent rect. 2 5
512 64.36 atmosphere 995.0 270 > th dose independent rect. 13 18
520 64.39 radiation 1.0 90 > th dose independent sin 12 NA
539 64.43 temperature 10.0 1440 > th dose independent rect. 21 8
542 64.43 temperature 30.0 1440 < th dose independent rect. 21 8
546 64.43 humidity 50.0 1440 > th dose independent rect. 21 8
552 64.43 atmosphere 995.0 1440 > th dose independent rect. 21 8
553 64.43 radiation 20.0 1440 < th dose independent rect. 21 8
565 64.43 temperature 10.0 1440 > th dose independent rect. 5 16
575 64.45 atmosphere 1010.0 30 < th dose independent rect. 20 8
585 64.48 wind 9.0 270 < th dose dependent rect. 7 6
590 64.49 atmosphere 995.0 90 > th dose dependent rect. 15 17
610 64.55 wind 9.0 270 < th dose independent rect. 6 21
653 64.68 humidity 50.0 270 > th dose independent rect. 18 19
657 64.70 precipitation 0.1 270 < th dose independent rect. 4 1
660 64.70 precipitation 0.1 270 < th dose dependent rect. 4 1
663 64.70 radiation 40.0 270 < th dose dependent rect. 2 5
672 64.72 precipitation 0.1 270 < th dose independent rect. 7 19
675 64.72 precipitation 0.1 270 < th dose dependent rect. 7 19
686 64.73 atmosphere 1000.0 10 > th dose dependent rect. 2 7
691 64.75 wind 9.0 270 < th dose independent rect. 5 23
692 64.75 wind 9.0 270 < th dose dependent rect. 18 8
746 64.86 wind 9.0 30 < th dose independent rect. 20 8
753 64.88 wind 1.0 270 > th dose independent rect. 13 5
764 64.89 temperature 10.0 270 > th dose independent rect. 3 3
766 64.89 temperature 30.0 270 < th dose independent rect. 3 3
767 64.89 humidity 50.0 270 > th dose independent rect. 3 3
770 64.89 atmosphere 995.0 270 > th dose independent rect. 3 3
771 64.89 atmosphere 1015.0 270 < th dose independent rect. 3 3
772 64.89 radiation 20.0 270 < th dose independent rect. 3 3
788 64.91 temperature 30.0 30 < th dose independent rect. 20 8
789 64.91 humidity 50.0 30 > th dose independent rect. 20 8
793 64.91 atmosphere 995.0 30 > th dose independent rect. 20 8
794 64.91 radiation 1.0 30 < th dose independent rect. 20 8
799 64.91 temperature 10.0 30 > th dose independent rect. 4 16
801 64.91 atmosphere 1015.0 30 < th dose independent rect. 4 16
803 64.91 wind 9.0 270 < th dose dependent rect. 3 3
804 64.91 radiation 1.0 30 < th dose dependent rect. 20 8
811 64.92 temperature 10.0 10 > th dose dependent rect. 9 17
842 64.99 precipitation 0.1 30 < th dose independent rect. 20 8
843 64.99 radiation 40.0 270 < th dose dependent rect. 3 3
844 64.99 precipitation 0.1 30 < th dose dependent rect. 20 8
880 65.03 wind 9.0 270 < th dose independent rect. 18 19
927 65.06 radiation 1.0 270 < th dose dependent rect. 4 1
936 65.07 temperature 10.0 270 > th dose independent rect. 4 1
938 65.07 temperature 30.0 270 < th dose independent rect. 4 1
939 65.07 humidity 50.0 270 > th dose independent rect. 4 1
942 65.07 atmosphere 995.0 270 > th dose independent rect. 4 1
943 65.07 atmosphere 1010.0 270 < th dose independent rect. 4 1
945 65.07 radiation 20.0 270 < th dose independent rect. 4 1
953 65.07 atmosphere 995.0 10 > th dose dependent rect. 15 18
966 65.08 radiation 40.0 270 < th dose dependent rect. 4 1
967 65.09 temperature 20.0 270 > th dose independent rect. 9 2
969 65.09 precipitation 0.1 30 < th dose independent rect. 4 16
972 65.09 precipitation 0.1 30 < th dose dependent rect. 4 16
998 65.14 radiation 1.0 270 < th dose independent rect. 4 1