BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0136300 Os01g0136300|AK062428
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0136300  Conserved hypothetical protein                      147   4e-36

>Os01g0136300 Conserved hypothetical protein
          Length = 156

 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 84/156 (53%)

Query: 1   MARTTLYRPRVKSFWXXXXXXXXXXXKSYRPDYAAAGEEDDGEKXXXXXXXXXXXXXXXX 60
           MARTTLYRPRVKSFW           KSYRPDYAAAGEEDDGEK                
Sbjct: 1   MARTTLYRPRVKSFWVLVRRLLCCRRKSYRPDYAAAGEEDDGEKSSLLLTSRSSLEELLV 60

Query: 61  XXXXXXXXXXXXXXVTCRNASLCAKKDGQAXXXXXXXXXXXXXXMARPAHGMVTTSSGGG 120
                         VTCRNASLCAKKDGQA              MARPAHGMVTTSSGGG
Sbjct: 61  SDDADDDGAIDDAAVTCRNASLCAKKDGQAPVVVLPPPGLHHPVMARPAHGMVTTSSGGG 120

Query: 121 RDGAAVQCXXXXXXXXXXXXXXXXXPWRPVLVAIPE 156
           RDGAAVQC                 PWRPVLVAIPE
Sbjct: 121 RDGAAVQCRRRFMFGGLRRRLMMRRPWRPVLVAIPE 156



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,322,850
Number of extensions: 74247
Number of successful extensions: 139
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)