Os01g0136300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0136300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.64 | 0.586 | 9.73 | 0.664 | 1.68 | -1.53 | 0.931 | 0.833 | -0.391 | 20.4 | 50.22 | 4009 | -- | -- |
| 155.67 | 0.581 | 9.75 | 0.626 | 1.68 | -1.2 | 0.942 | -- | -0.39 | 20.4 | 50.57 | 4000 | -- | -- |
| 158.27 | 0.586 | 9.73 | 0.633 | 1.68 | -1.53 | -- | 0.971 | -0.389 | 20.4 | 50.17 | 4049 | -- | -- |
| 158.35 | 0.586 | 9.74 | 0.586 | 1.68 | -1.14 | -- | -- | -0.387 | 20.4 | 50.63 | 4047 | -- | -- |
| 311.8 | 0.822 | 9.71 | 0.484 | -- | -0.723 | -- | -0.611 | -0.391 | -- | 49.58 | 4327 | -- | -- |
| 173.2 | 0.617 | 9.73 | 0.265 | 1.65 | -- | 0.725 | -- | -0.334 | 20.3 | -- | -- | -- | -- |
| 174.83 | 0.619 | 9.73 | 0.244 | 1.65 | -- | -- | -- | -0.333 | 20.3 | -- | -- | -- | -- |
| 305.77 | 0.814 | 9.7 | 0.436 | -- | -1.02 | -- | -- | -0.425 | -- | 54.92 | 7159 | -- | -- |
| 164.31 | 0.597 | 9.76 | -- | 1.63 | -0.841 | -- | -- | -0.471 | 20.4 | 56.13 | 7182 | -- | -- |
| 324.9 | 0.842 | 9.69 | 0.233 | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
| 176.39 | 0.621 | 9.74 | -- | 1.65 | -- | -- | -- | -0.361 | 20.3 | -- | -- | -- | -- |
| 310.08 | 0.82 | 9.72 | -- | -- | -0.966 | -- | -- | -0.476 | -- | 57 | 7172 | -- | -- |
| 326.33 | 0.843 | 9.69 | -- | -- | -- | -- | -- | -0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.26 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 12 |
| 3 | 141.85 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 11 |
| 6 | 142.13 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 26 | 143.54 | temperature | 25 | 270 | > th | dose independent | sin | 16 | NA |
| 62 | 144.93 | temperature | 30 | 90 | < th | dose dependent | sin | 14 | NA |
| 64 | 144.99 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 4 |
| 66 | 145.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 68 | 145.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 84 | 145.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 85 | 145.58 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 96 | 145.80 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 109 | 145.96 | temperature | 10 | 90 | > th | dose dependent | sin | 14 | NA |
| 115 | 146.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 119 | 146.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 3 |
| 128 | 146.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 158 | 146.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 258 | 147.68 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 13 |
| 293 | 148.01 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 11 |
| 389 | 148.78 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 5 |
| 518 | 149.66 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 528 | 149.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 535 | 149.72 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 548 | 149.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 552 | 149.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 567 | 149.85 | radiation | 30 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 572 | 149.86 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 575 | 149.87 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 576 | 149.87 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 600 | 149.89 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 628 | 149.94 | radiation | 30 | 43200 | > th | dose independent | no | NA | NA |
| 630 | 149.94 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 735 | 149.95 | radiation | 30 | 43200 | > th | dose independent | sin | 1 | NA |
| 769 | 149.98 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 817 | 150.00 | radiation | 40 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 865 | 150.00 | radiation | 20 | 43200 | > th | dose dependent | sin | 16 | NA |
| 930 | 150.03 | radiation | 30 | 43200 | > th | dose independent | sin | 11 | NA |
| 935 | 150.03 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 969 | 150.04 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 7 |