BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0133500 Os01g0133500|AK101585
(526 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0133500 Beta-lactamase-like domain containing protein 941 0.0
>Os01g0133500 Beta-lactamase-like domain containing protein
Length = 526
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/526 (88%), Positives = 463/526 (88%)
Query: 1 MGSPSYRLAAAITIPSTDEFLLVRQXXXXXXXXXXXXXXYLYRGYVDSELYDLPSAPLRP 60
MGSPSYRLAAAITIPSTDEFLLVRQ YLYRGYVDSELYDLPSAPLRP
Sbjct: 1 MGSPSYRLAAAITIPSTDEFLLVRQPPPPSPAPAPEEEEYLYRGYVDSELYDLPSAPLRP 60
Query: 61 LAGELRSDVAIRGADSVAGRLDISRLDVSASLDQICDQFGLPSGICGEWRLLKYVEEAEF 120
LAGELRSDVAIRGADSVAGRLDISRLDVSASLDQICDQFGLPSGICGEWRLLKYVEEAEF
Sbjct: 61 LAGELRSDVAIRGADSVAGRLDISRLDVSASLDQICDQFGLPSGICGEWRLLKYVEEAEF 120
Query: 121 GPDAGLNTVLIIGSLESKLEALQDSWRWMSKECXXXXXXXXXXXXTRIGPYAYIGLLKPE 180
GPDAGLNTVLIIGSLESKLEALQDSWRWMSKEC TRIGPYAYIGLLKPE
Sbjct: 121 GPDAGLNTVLIIGSLESKLEALQDSWRWMSKECASGLLSGAKSGGTRIGPYAYIGLLKPE 180
Query: 181 LPSNWTVAPALPCQEYPPGIKLVPMKSNTLQPFRTTNLVVVVATDTPGGSTCSDCVVYGD 240
LPSNWTVAPALPCQEYPPGIKLVPMKSNTLQPFRTTNLVVVVATDTPGGSTCSDCVVYGD
Sbjct: 181 LPSNWTVAPALPCQEYPPGIKLVPMKSNTLQPFRTTNLVVVVATDTPGGSTCSDCVVYGD 240
Query: 241 ALLIDPGCCSQVHGKLAELVNSLPKKXXXXXXXXXXXXXXXXXXXQRCNPDAVLLTHKNT 300
ALLIDPGCCSQVHGKLAELVNSLPKK QRCNPDAVLLTHKNT
Sbjct: 241 ALLIDPGCCSQVHGKLAELVNSLPKKLVVLVTHHHHDHVDGLSVVQRCNPDAVLLTHKNT 300
Query: 301 MSRIGKGNWSIGYTAVAGGENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDHCVG 360
MSRIGKGNWSIGYTAVAGGENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDHCVG
Sbjct: 301 MSRIGKGNWSIGYTAVAGGENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDHCVG 360
Query: 361 QGSATLDNRAGGNMKDYFQTTYNFLDMSPHVLIPMHGRINLWPKHMLCGYLRHRRAREVS 420
QGSATLDNRAGGNMKDYFQTTYNFLDMSPHVLIPMHGRINLWPKHMLCGYLRHRRAREVS
Sbjct: 361 QGSATLDNRAGGNMKDYFQTTYNFLDMSPHVLIPMHGRINLWPKHMLCGYLRHRRAREVS 420
Query: 421 ILQSIENGARTLFDIVSKTYADVDRKLWIPASFNVRLHVDHLNSQNKLPKSFSMDKFEVS 480
ILQSIENGARTLFDIVSKTYADVDRKLWIPASFNVRLHVDHLNSQNKLPKSFSMDKFEVS
Sbjct: 421 ILQSIENGARTLFDIVSKTYADVDRKLWIPASFNVRLHVDHLNSQNKLPKSFSMDKFEVS 480
Query: 481 CGTNFMLWWAVAYVQARSSPXXXXXXXXXXXXXXXXXXKRNSGNEP 526
CGTNFMLWWAVAYVQARSSP KRNSGNEP
Sbjct: 481 CGTNFMLWWAVAYVQARSSPAILAATALAGGLAIAYALKRNSGNEP 526
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,341,158
Number of extensions: 705724
Number of successful extensions: 1185
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 421
Effective length of database: 11,553,331
Effective search space: 4863952351
Effective search space used: 4863952351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)