Os01g0133500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-lactamase-like domain containing protein.
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Os01g0133500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-lactamase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.53 | 0.427 | 8.28 | -0.397 | 1.35 | -1.98 | 1.17 | -0.517 | 0.0593 | 8.21 | 29.71 | 10 | -- | -- |
| 82.74 | 0.427 | 8.28 | -0.473 | 1.33 | -1.96 | 1.24 | -- | 0.0467 | 8.26 | 29.81 | 4 | -- | -- |
| 86.53 | 0.433 | 8.27 | -0.305 | 1.33 | -1.95 | -- | -0.79 | 0.0729 | 8.26 | 29.61 | 8 | -- | -- |
| 87.48 | 0.438 | 8.28 | -0.433 | 1.33 | -1.94 | -- | -- | 0.0489 | 8.26 | 29.81 | 4 | -- | -- |
| 183.43 | 0.631 | 8.32 | -0.308 | -- | -2.13 | -- | -0.98 | 0.0379 | -- | 28.08 | 3 | -- | -- |
| 135.17 | 0.545 | 8.2 | -0.0147 | 1.51 | -- | 1.03 | -- | 0.427 | 9.98 | -- | -- | -- | -- |
| 139.3 | 0.553 | 8.2 | 0.0256 | 1.5 | -- | -- | -- | 0.429 | 10 | -- | -- | -- | -- |
| 184.73 | 0.633 | 8.33 | -0.472 | -- | -2.11 | -- | -- | 0.0064 | -- | 28.45 | 2 | -- | -- |
| 91.94 | 0.449 | 8.27 | -- | 1.33 | -1.77 | -- | -- | 0.127 | 8.46 | 29.81 | 7 | -- | -- |
| 275.45 | 0.776 | 8.24 | 0.00717 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 139.32 | 0.552 | 8.2 | -- | 1.5 | -- | -- | -- | 0.426 | 10 | -- | -- | -- | -- |
| 190.23 | 0.642 | 8.31 | -- | -- | -1.98 | -- | -- | 0.083 | -- | 28.5 | 2 | -- | -- |
| 275.45 | 0.775 | 8.24 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 2 | 82.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 82.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 82.59 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 5 | 82.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 7 | 82.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 8 | 82.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 83.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 17 | 84.15 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 19 | 84.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 24 | 85.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 25 | 85.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 26 | 85.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 27 | 85.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 39 | 86.89 | temperature | 30 | 30 | < th | dose dependent | sin | 6 | NA |
| 46 | 87.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 53 | 87.74 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 59 | 88.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 63 | 88.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 104 | 89.52 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 110 | 89.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 118 | 90.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 132 | 90.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 174 | 91.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 213 | 91.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 236 | 92.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 326 | 93.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 509 | 95.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 527 | 95.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 530 | 95.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 534 | 95.90 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 564 | 96.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 570 | 96.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 572 | 96.21 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 577 | 96.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 584 | 96.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 603 | 96.39 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 655 | 96.69 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 656 | 96.70 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 682 | 96.86 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 701 | 96.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 705 | 97.00 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 841 | 97.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 858 | 97.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 889 | 97.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 956 | 98.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 972 | 98.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 989 | 98.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 990 | 98.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |