BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0127400 Os01g0127400|Os01g0127400
         (397 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0127400  Conserved hypothetical protein                      665   0.0  

>Os01g0127400 Conserved hypothetical protein
          Length = 397

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/397 (84%), Positives = 334/397 (84%)

Query: 1   MALHXXXXXXXXXXXXXXXXXXXXXAHCLAPSASARGPSFRRPYTSXXXXXXXXXXXXXX 60
           MALH                     AHCLAPSASARGPSFRRPYTS              
Sbjct: 1   MALHLTRPFLRPSPPPPRPTRRSSRAHCLAPSASARGPSFRRPYTSVLVVPTGVGAAVGG 60

Query: 61  XXXXXLPVARALGAVADCVISHPNVLNAAMLYWPMPNTLYVEGYALDRFAEGSWALQPVH 120
                LPVARALGAVADCVISHPNVLNAAMLYWPMPNTLYVEGYALDRFAEGSWALQPVH
Sbjct: 61  FAGDALPVARALGAVADCVISHPNVLNAAMLYWPMPNTLYVEGYALDRFAEGSWALQPVH 120

Query: 121 QNKVGLVLDSGIEEELRLRHLQVADAARASLGLPVVEYIVTDTPLEIKTWFDPKCGKSTG 180
           QNKVGLVLDSGIEEELRLRHLQVADAARASLGLPVVEYIVTDTPLEIKTWFDPKCGKSTG
Sbjct: 121 QNKVGLVLDSGIEEELRLRHLQVADAARASLGLPVVEYIVTDTPLEIKTWFDPKCGKSTG 180

Query: 181 SVGNSDSLLRAVEALVNRSDVNAVAVVARFPDDDPEDSDCYREGKGVDLLAGVEAIISHL 240
           SVGNSDSLLRAVEALVNRSDVNAVAVVARFPDDDPEDSDCYREGKGVDLLAGVEAIISHL
Sbjct: 181 SVGNSDSLLRAVEALVNRSDVNAVAVVARFPDDDPEDSDCYREGKGVDLLAGVEAIISHL 240

Query: 241 IVKKFKIXXXXXXXXXXXXXXXXXXXXXXXEEIGHTFLPCVLAGLSNAPQYVMRRNGNMD 300
           IVKKFKI                       EEIGHTFLPCVLAGLSNAPQYVMRRNGNMD
Sbjct: 241 IVKKFKIPAAHAPAVLPPVLSLSVSPRSAAEEIGHTFLPCVLAGLSNAPQYVMRRNGNMD 300

Query: 301 NGCIVASDVDSVILPKDACGGDGTIAFARTATKNKPLIITVQENETVLDDTPDKFNIEAL 360
           NGCIVASDVDSVILPKDACGGDGTIAFARTATKNKPLIITVQENETVLDDTPDKFNIEAL
Sbjct: 301 NGCIVASDVDSVILPKDACGGDGTIAFARTATKNKPLIITVQENETVLDDTPDKFNIEAL 360

Query: 361 NVQNYWEAIGVIAAHKAAGLGEKFGQNSFWVPEISEI 397
           NVQNYWEAIGVIAAHKAAGLGEKFGQNSFWVPEISEI
Sbjct: 361 NVQNYWEAIGVIAAHKAAGLGEKFGQNSFWVPEISEI 397



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,734,850
Number of extensions: 455746
Number of successful extensions: 929
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)